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ET12645

CSHL Arabidopsis genetrap mutant lines

Original: ET12645

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12645

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2939429 [Map]; Strand: w
      • AT3G09560.1 - [+] show detail - Lipin family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G09560.2 - [+] show detail - Lipin family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G09560.3 - [+] show detail - Lipin family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET12645 - 5-prime edge 
    GGAGAGATTT ATAAGAAAGA GGAAAAAGAT GGTTGTTTTG GATAACCAGA 
    ACAAATTAAA TCCGCCATGA ACTTAAGAGA CTGTAATTGC TTATATAAGA 
    TGATGAGATG ACTCTGTGAA GGGAGGAGGG AGAATTACGA GAAGGGTCTC 
    TCTTCGACTT TTGTCGTAAT TATTGCTTCT CTAAGAGGGT ACTTTTGGTA 
    TTTCCATATT AAAACCTGCG AAAGAATATG CTTGATTTTA CACAAAAGAA 
    AACAAATATG CTCAATTAAT ATATTTTTGA CCACAAAAAT TAAGTTTCCA 
    CCTTTTTTTT GTTTAAATCT ACTTTTTAAA ACAACGTTTA AATCTATTAT 
    TTTTTTCACT TCTTGATGAT AAATGATAAA ATAGTTTTAT AAAAAATTGA 
    AATATAGTCT TGGTAAAGAC ATAGGTGAAA TTAATCTATT AAATAAATGT 
    TCATAAAATA CAAAAAAAAA AAATGGGATA

AT3G09560.1

Model type
Protein coding
Short Description
Lipin family protein
Computational Description
PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1 (PAH1); CONTAINS InterPro DOMAIN/s: LNS2, Lipin/Ned1/Smp2 (InterPro:IPR013209), Lipin, N-terminal conserved region (InterPro:IPR007651); BEST Arabidopsis thaliana protein match is: phosphatidic acid phosphohydrolase 2 (TAIR:AT5G42870.1); Has 5210 Blast hits to 3195 proteins in 460 species: Archae - 22; Bacteria - 1897; Metazoa - 1353; Fungi - 717; Plants - 207; Viruses - 16; Other Eukaryotes - 998 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09560.2

Model type
Protein coding
Short Description
Lipin family protein
Computational Description
Lipin family protein; CONTAINS InterPro DOMAIN/s: LNS2, Lipin/Ned1/Smp2 (InterPro:IPR013209), Lipin, N-terminal conserved region (InterPro:IPR007651); BEST Arabidopsis thaliana protein match is: phosphatidic acid phosphohydrolase 2 (TAIR:AT5G42870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09560.3

Model type
Protein coding
Short Description
Lipin family protein
Computational Description
Lipin family protein; FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: cellular response to phosphate starvation, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: LNS2, Lipin/Ned1/Smp2 (InterPro:IPR013209), Lipin, N-terminal conserved region (InterPro:IPR007651); BEST Arabidopsis thaliana protein match is: phosphatidic acid phosphohydrolase 2 (TAIR:AT5G42870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR