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ET12647

CSHL Arabidopsis genetrap mutant lines

Original: ET12647

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12647

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18828990 [Map]; Strand: c
      • AT1G50800.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Plant mobile domain protein famil...
        Distance: -652; Region: promoter
      • AT1G50810.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET12647 - 3-prime edge 
    CGGTAGAGGT TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATTCTGG 
    AGCATTAAAA TGGCAACCAT TTTCAGGACC AGAAAACTAT GGTCCGTGGT 
    TGAAGAAGGC GTACCGGTCG AACCGGTACA AGCGGAAGAA ACTCCTGAAA 
    CTACAAGAGC AAAGACGCTC AGAGAAGAAG CAGTGACAAA TGATACAATG 
    GCTTTGCAAA TCTTGCAAAC TGCCGTTACC GATCAAATCT TCTCACGGAT 
    TGCAGCGGCA TCATCATCAA AAGAAGCGTG GGATGTGTTG AAGGACGAAT 
    ACCAAGGATC TCCACAAGTC CGATTGGTTA AACTTCAATC GCTGCGTAGG 
    GAGTACGAGA ACTTGAAGAT GTATGACAAT GACAACATCA AGACATTCAC 
    CGATAAGTTA ATTGTTCTGG AAAATCAATT GACTTATCAT GGTGAAAAGA 
    AGACAAACAC TTAACTCATA CAGAAGATAT T

AT1G50800.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Plant mobile domain protein family (TAIR:AT1G50790.1); Has 38 Blast hits to 34 proteins in 9 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 2; Plants - 26; Viruses - 1; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G50810.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 4.6e-216 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR