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ET12651

CSHL Arabidopsis genetrap mutant lines

Original: ET12651

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12651

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET12651 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTACATG CATATGC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 799443 [Map]; Strand: c
      • AT3G03370.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: DegP protease 7 (TAIR:AT3G03380.1...
        Distance: -295; Region: promoter
      • AT3G03370.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -295; Region: promoter
      • AT3G03380.1 - [+] show detail - DegP protease 7
        Distance: -172; Region: promoter
    Flanking Genome Sequence: ET12651 - 3-prime edge 
    ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACATGC ATATGCCTTC 
    TTCTCTCTCG ACCAAACATA AATTATACTA TAATTTCAGT TTTGGCTTAA 
    CAGATATTTA ATTTCATTCT ATGTGCTATA CCAGTGTAAT TTCATTTTGC 
    AAGTGCTTTT GGTTTCTTCT CTTAACCCGC GGAAACCGAA ACCAAAATTA 
    TTCTAATTTC CATAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23156313 [Map]; Strand: c
      • AT3G62610.1 - [+] show detail - myb domain protein 11
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: ET12651 - 5-prime edge 
    GGTGTCAAAT CTTTCAAGAA AAAGCCAAGC AGCCATCTTG TTTTCTTCGT 
    CAATATCCAA CGGTTCTCCA AAGTCGTTGG AGTCCCTTTG TCTGATCTCA 
    GATTCCATTT CCTCTTCATC TAAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23156329 [Map]; Strand: c
      • AT3G62610.1 - [+] show detail - myb domain protein 11
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: ET12651 - 5-prime edge 
    TTTCTCCCTG TATGATGGTG TCAAATCTTT CAAGAAAAAG CCAAGCAGCC 
    ATCTTGTTTT CTTCGTCAAT ATCCAACGGT TCTCCAAAGT CGTTGGAGTC 
    CCTTTGTCTG ATCTCAGATT CCATTTCCTC TCCATCTAAC AGCCTCGACA 
    AAACCGAATC AAGATCCTCT TTTTCGTCCC AAAGGGTTTG ACCTTCTCTC 
    CATACAAAGT CCCAGTCAAC GAAATCATCA GCCATCGTTT CGATATTTTT 
    GTGCCCAACT GACATCCCTC CATATGGCTC AGAGTTTTTT ACGTTGTTCG 
    ACTCACATGA GGACACGTGG ACAGCATGAG AGTCGTCCAA TAGAAAACAA 
    GAATCGAAAA TGTCGTCATT GAGACACAAA GCTCCATCGT CGCCATTAAT 
    GCTTGGGTTA CAATCGCCAT CGTCTCCATA ACCACATGGT CCTAAACCGG 
    GTTCCTCTGC TCCACTTAAG CTACTACTTG ACAACACCAT TAATGCGTCT 
    TCTTTGTCTC CCTCTCCATT CTCTATTGCC GGAGGTGGCA AAACGATGTC 
    ACTTTTGTTT GC

AT3G03370.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: DegP protease 7 (TAIR:AT3G03380.1); Has 55 Blast hits to 55 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03370.2

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: DegP protease 7 (TAIR:AT3G03380.1).
Link
InterPro Scan - TAIR

AT3G03380.1

Model type
Protein coding
Short Description
DegP protease 7
Curator Summary
Encodes a putative DegP protease.
Computational Description
DegP protease 7 (DegP7); CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03370.1); Has 8327 Blast hits to 7895 proteins in 2064 species: Archae - 65; Bacteria - 6254; Metazoa - 235; Fungi - 503; Plants - 137; Viruses - 0; Other Eukaryotes - 1133 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62610.1

Model type
Protein coding
Short Description
myb domain protein 11
Curator Summary
Member of the R2R3 factor gene family.
Computational Description
myb domain protein 11 (MYB11); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 12 (TAIR:AT2G47460.1); Has 8738 Blast hits to 8112 proteins in 470 species: Archae - 0; Bacteria - 0; Metazoa - 742; Fungi - 445; Plants - 5931; Viruses - 3; Other Eukaryotes - 1617 (source: NCBI BLink).
Link
InterPro Scan - TAIR