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ET12660

CSHL Arabidopsis genetrap mutant lines

Original: ET12660

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12660

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3951463 [Map]; Strand: w
      • AT1G11720.1 - [+] show detail - starch synthase 3
        Distance: -90; Region: promoter
      • AT1G11720.2 - [+] show detail - starch synthase 3
        Distance: -90; Region: promoter
    Flanking Genome Sequence: ET12660 - 3-prime edge 
    AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT AGTTGAAGCA 
    GCCCCCTGAC TCCACTGCCT CACCACACCA CACTTCTCAA TCACCGAAGT 
    CTGAAACTCA TCTCATTCAT TATTTTATTC CAATTTATTC AGAGAATACA 
    TGTGTTGATT AATATTATTA TATTTATCAT AACAGTGGCT TTTATTCATG 
    AAATTAAACC AATGGTGCTC TGATTTGTTG ACATCTAGCA AAATAACAAC 
    ACCAGATTTT ACAATCGGAG TCTCTCACAC GCAGCCATTT GTTTGTATAA 
    TGTGGAAAAT AATATTCGTC TGCTTCTCAG ATTATATTCC TTACGGTGTC 
    TACCAACATT ACATAATCTG GACGGCTAAT CTTAAACAAA TCACGTGGAA 
    AGTATCGTAA TAGCTCGTGA CAACCAAATT GTTTGGCCGG TGCATTAGCG 
    CCACGTGTCA GACAATCCCC GCTTTACAGG ACCACGACAA GCGATCCTGT 
    TTCCAACACT GACCGTTGAT TACAAAGAAT CGTCCAAGGG TCCACGTGTA 
    CGAACAGGAT ACGAATCTGA TCCGTACCGT ACCTCCAAAA CAAACCCTCT 
    GGACAGTTCA GTAGTTTCTT CCT

AT1G11720.1

Model type
Protein coding
Short Description
starch synthase 3
Curator Summary
Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. The protein apparently contains a starch-binding domain (SBD).
Computational Description
starch synthase 3 (SS3); FUNCTIONS IN: starch synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: starch biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296), Carbohydrate binding domain, family 25 (InterPro:IPR005085); BEST Arabidopsis thaliana protein match is: starch synthase 4 (TAIR:AT4G18240.1); Has 8453 Blast hits to 8330 proteins in 2963 species: Archae - 164; Bacteria - 3762; Metazoa - 19; Fungi - 103; Plants - 3720; Viruses - 1; Other Eukaryotes - 684 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11720.2

Model type
Protein coding
Short Description
starch synthase 3
Curator Summary
Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. The protein apparently contains a starch-binding domain (SBD).
Computational Description
starch synthase 3 (SS3); CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296), Carbohydrate binding domain, family 25 (InterPro:IPR005085); BEST Arabidopsis thaliana protein match is: starch synthase 4 (TAIR:AT4G18240.1).
Link
InterPro Scan - TAIR