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ET12665

CSHL Arabidopsis genetrap mutant lines

Original: ET12665

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12665

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30140514 [Map]; Strand: c
      • AT1G80120.1 - [+] show detail - Protein of unknown function (DUF567)
        Distance: 310; Region: intergenic
      • AT1G80130.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 447; Region: intergenic
    Flanking Genome Sequence: ET12665 - 3-prime edge 
    AAACGGTAGA GGTTTTTACC GACCGTTACC GACCGTTTTC ATCCCTACTT 
    AGTTACAATG GAAATTGTCG AAAGAAAAAG AAGGAAAAGT TTCATCTTCT 
    TAAAAAGAAA TATTGGACGG AAAGCATGTC GGTGTATGAC CAAACAGTAG 
    TAAATAGTTA AGCAGACAGG AAGCCTTGAT TATACGAATA ACAAGTTTTT 
    TTGGTTCATA CGGTGATCGT CTTTTGTTCA CAAAAAGAAA AAACTTCTTC 
    GTCTCTTATC TTAGCTGGAT CATAACTAAC TATTTAGATA GACAAAGTTA 
    AAGATCAAAT TCTCCTTGCA TTTAAGTTGT CCACACCTCT TTTCTAGTAT 
    AATCATTTTC TTGTTTCGTG GAATGGTCAC ATTGAATTTT AATTTTGGCC 
    CATTAGCCCA CTAACATGTG GAGGTTACCA ACGAGAAATC AGATGTTTAG 
    GCCCAAGTAT ATAAGAACAA GATATCTTTG ACTTTAACTC CAAACAAAAT 
    CGATCGATCT GTATCATCAA TTTCATCATA CTTTTTTTTA ACAAACAAAT 
    GCCTAATATT TTGTCTATCT CGATAGGACA TGGGTAAGTT TCATACTTTA 
    TAATACAAAA AGACACATAA ATACTGCAAA TATAAGTACA TACCCTTATT 
    ATGAAGACTA CAGAACATAT ACAAAGATTC TGAACATATA TTATACACGC 
    ATATTGCATT TGAGTAT

AT1G80120.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF567)
Computational Description
Protein of unknown function (DUF567); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF567) (TAIR:AT3G15810.1); Has 439 Blast hits to 438 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 9; Plants - 430; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80130.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: response to oxidative stress; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G20190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR