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ET12667

CSHL Arabidopsis genetrap mutant lines

Original: ET12667

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12667

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET12667 - 5-prime edge 
    TTCCATCCTA CTTTATCCCT GCCTGGTTGT GGGGTTCTGC CCGTGTGACA 
    ACAGTGGGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26249073 [Map]; Strand: w
      • AT1G69770.1 - [+] show detail - chromomethylase 3
        Distance: 0; Region: exon19 (CDS)
    Flanking Genome Sequence: ET12667 - 5-prime edge 
    TTTATCCCTG CCTGGTTGTG GGGTTCTGCC CGTGTGACAA CAGTGGGGAC 
    AATTTCGTCC CACCAAAGAC GACCAAAAGG TCTGAAAACA GCGAAGGGCT 
    TAAGTCAATT TCCATAACAG AAAACAATAG TCAAATACAG AATTTTCAGA 
    GACGAAGAAA AGAGAATTAA AACTCACTTG CATGATTTCC CATCGACATA 
    TGTTAAGGCA TAATCGGGAA CCTGTTTGAA TAACATAGCC AGCCAATCAG 
    GAGAAAAGCA ACTTGATATG AGACCAAAAA AAAGAGATGA TCATTCTTAC 
    CAATGTTTTT CCAGATTCAA GTTTGACCCT TTCCTTTCCC TCTTCCAACT 
    TGACTACATT ACCAGGTCCA ACAATAACAC CAGGAAAGTC CCTAAAATTC 
    GCTCCCTGAT ACCAAAAGAT GTTTTGAAAT AATCAGAATA TTCCTAGACA 
    CTAAAACAGA CCAGAGCCAA AAAAATATAT GATCGTCAAT CGAGTATAAA 
    GAAAGTTGTA CCTTTCTCTT GGGGACCTGA CAAACCCGTT CATAGTCATT 
    TATATTAAGA TTAAGAGGGT GATGATCATA TAAGACATGC TTTTTGGACT 
    TGGACTTTGA TTGTGAACCT GACGCTTCTG GTGAAAAATT CAGAAACAAT 
    TTGTTAAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26249067 [Map]; Strand: w
      • AT1G69770.1 - [+] show detail - chromomethylase 3
        Distance: 0; Region: exon19 (CDS)
    Flanking Genome Sequence: ET12667 - 5-prime edge 
    TCCTACTTTC TCCCTGCCTG GTTGTGGGGT TCTGCCCGTG TGACAACAGT 
    GGGGACAATT TCGTCCCACC AAAGACGACC AAAAGGTCTG AAAACAGCGA 
    AGGGCTTAAG TCAATTTCCA TAACAGAAAA CAATAGTCAA ATACAGAATT 
    TTCAGAGACG AAGAAAAGAG AATTAAAACT CACTTGCATG ATTTCCCATC 
    GACATATGTT AAGGGATAAT CGGGAACCTG TTTGAATAAC ATAGCCAGCC 
    AATCAGGAGA AAAGCAACTT GATATGAGAC CAAAAAAAAG AGATGATCAT 
    TCTTACCAAT GTTTTTCCAG ATTCAAGTTT GACCCTTTCC TTTCCCTCTT 
    CCAACTTGAC TACATTACCA GGGCCAACAA TAACACCAGG AAAGTCCCTA 
    AAATTCGCTC CCTGATACCA AAAGATGTTT TGAAATAATC AGAATATTCC 
    TAGACACTAA AAC

AT1G69770.1

Model type
Protein coding
Short Description
chromomethylase 3
Curator Summary
Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing.
Computational Description
chromomethylase 3 (CMT3); FUNCTIONS IN: DNA (cytosine-5-)-methyltransferase activity; INVOLVED IN: in 6 processes; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Chromo domain-like (InterPro:IPR016197), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), DNA methylase, C-5 cytosine-specific, active site (InterPro:IPR018117), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: chromomethylase 2 (TAIR:AT4G19020.1); Has 4337 Blast hits to 3739 proteins in 974 species: Archae - 208; Bacteria - 2545; Metazoa - 230; Fungi - 161; Plants - 416; Viruses - 30; Other Eukaryotes - 747 (source: NCBI BLink).
Link
InterPro Scan - TAIR