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ET12685

CSHL Arabidopsis genetrap mutant lines

Original: ET12685

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12685

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26762009 [Map]; Strand: w
      • AT1G70980.1 - [+] show detail - Class II aminoacyl-tRNA and biotin synthetases superfamily protein
        Distance: -330; Region: promoter
    Flanking Genome Sequence: ET12685 - 5-prime edge
    CTTTCTCCCT ACTCATCCTA AGCTTCTTCC ATGATACGAG CGTGGTGGTC 
    TCCTATTGGA GAAGTTCGAC TTTAAGTACT TTCCGATCAC CGGCAGTCAA
    TATCTCTGAC GAGATTTTAC ACGATTCGCC GAAAGTTGGA CCGTCATCGG
    TTGGGACCGG GTCAGAGTTA GACTCTGTAG AGACCCGAAT CGGAGAGGAA
    GTGAAGGCCC ATGAATAAGC CCATACAATT ACAATTCCAA GGAAAAGAAG
    TATACAAAGA CACGTTTTGG AGCTGCGTAA ACTGTCCCCA TAATCCTTTG
    CCATCAACAA CTTCGATTCC GGGGACTACA AGCCTCTGTC TTCTCTCTCG
    TTTAGGGTTT TATTCCAAAA TTCCGTGCTT CGATCCCGAA GATCAGAAAA
    AATGGGTGAT GAGATTGTGC CTCCGGCGAA TCAGTTAGCC GCCGATAACT
    TGGAAAACGA TGGATCTACG GTGCAGAAAG CGCAATTTTC AGACAGGGTT
    CTGATTCGAT CGATTTTGGG CGGCGGAGCT AAACTCGCCG GTCAAAAGGT
    TAGAATCGGT GGTTGGGTTA AAACCGGAAG ACAGCAAGGG AAAGGGACTT
    TTGCTTTCCT TGAGGTTAAC GATGGGTCTT GTCCAGCGAA TCTCCAGGTT
    ATGGTTGA
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26762016 [Map]; Strand: w
      • AT1G70980.1 - [+] show detail - Class II aminoacyl-tRNA and biotin synthetases superfamily protein
        Distance: -323; Region: promoter
    Flanking Genome Sequence: ET12685 - 5-prime edge
    CCTACTCTCC ATAAGCTTCT TCCATGATAC GAGCGTGGTG GTCTCCTATT 
    GGAGAAGTTC GACTTTAAGT ACTTTCCGAT CACCGGCAGT CAATATCTCT
    GACGAGATTT TACACGATTC GCCGAAAGTT GGACCGTCAT CGGTTGGGAC
    CGGGTCAGAG TTAGACTCTG TAGAGACCCG AATCGGAGAG GAAGTGAAGG
    CCCATGAATA AGCCCATACA ATTACAATTC CAAGGAAAAG AAGTATACAA
    AGACACGTTT TGGAGCTGCG TAAACTGTCC CCATAATCCT TTGCCATCAA
    CAACTTCGAT TCCGGGGACT ACAAGCCTCT GTCTTCTCTC TCGTTTAGGG
    TTTTATTCCA AAATTCCGTG CTTCGATCCC GAAGATCAGA AAAAATGGGT
    GATGAGATTG TGCCTCCGGC GAATCAGTTA GCCGCCGATA ACTTGGAAAA
    CGATGGATCT ACGGTGCAGA AAGCGCAATT TTCAGACAGG GTTCTGATTC
    GATCGATTTT GGGCGGCGGA GCTAAACTCG CCGGTCAAAA GGTTAGAATC
    GGTGGTTGGG TTAAAACCGG AAGACAGCAA GGGAAAGGGA CTTTTGCTTT
    CCTTGAGGTT AACGATGGGT CTTGTCCAGC GAATCTCCAG GTTATGGTTG
    AT

AT1G70980.1

Model type
Protein coding
Short Description
Class II aminoacyl-tRNA and biotin synthetases superfamily protein
Computational Description
SYNC3; FUNCTIONS IN: in 6 functions; INVOLVED IN: asparaginyl-tRNA aminoacylation, aspartyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR004522), WHEP-TRS (InterPro:IPR000738), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Aspartyl/Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR002312), Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: Class II aminoacyl-tRNA and biotin synthetases superfamily protein (TAIR:AT5G56680.1); Has 17935 Blast hits to 13295 proteins in 2647 species: Archae - 620; Bacteria - 13541; Metazoa - 618; Fungi - 807; Plants - 214; Viruses - 0; Other Eukaryotes - 2135 (source: NCBI BLink).
Link
InterPro Scan - TAIR