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ET12686

CSHL Arabidopsis genetrap mutant lines

Original: ET12686

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12686

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET12686 - 3-prime edge 
    TTTCATCCCT GGGGAAGTTT ACCTTATGGA CTTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20078477 [Map]; Strand: c
      • AT1G53780.1 - [+] show detail - peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;AT...
        Distance: -764; Region: promoter
      • AT1G53780.2 - [+] show detail - peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;AT...
        Distance: -729; Region: promoter
      • AT1G53780.3 - [+] show detail - peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;AT...
        Distance: -249; Region: promoter
      • AT1G53785.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: ET12686 - 5-prime edge 
    ACTTTCTCCC GGATAGCCTC GTTGAGAGAA TATCGGTTTT ATTTCCGGTT 
    TAAATCTCAT CAACAAACCA TCTCTAAACC GGGTTGTACT TATGAATTGA 
    AAACATCACG TAGTTTTATT ATCTCTTCTA TCTGAAAACA GCACGCATGT 
    TATAGCATTT TGAATGATTT TTTATAAGGG ATTATTTAGA GGCCTAAGGC 
    GCGTAAAGAA GAGCTAAAAG CGTAACAGAA GAATCTCTCT CAGTCGCAAC 
    AGTTTCCGGT TACTCCAAGA TCGCCGTCGT GCACCTTTCT CTTCTCTCGA 
    CCAGGTTCTG AGGTTAGCTC GTAAATCTCA TCGACCATCA CTTCTTCTAC 
    TACTCGTTCC AATTACCATA GTACGAAGAC ATTGCTCGAG AATCTCTCAG 
    TCGCAACAGA GTCCGACTAC TCCAAGATCG CCGCCGTGAA CCTTTCTCTC 
    CACTCGACCA GNNTCTGAGG TTAGTTCCTA TATCTCATTG ATCATCTCTT 
    CTTATCCTAC TCTGATTCAA TTACGATAGT AAGACGACAT TGCTCGCGAA 
    TCTTGGTCAG GTTGATGTTT CTTGTAACCG CAACTTTGCA AAGGTTTGGC 
    TATATCGTTC CTTTGATGCT T

AT1G53780.1

Model type
Protein coding
Short Description
peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases
Computational Description
peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein folding, protein catabolic process; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Cyclophilin-like (InterPro:IPR015891), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle triple-A 1A (TAIR:AT1G53750.1); Has 32848 Blast hits to 30585 proteins in 3159 species: Archae - 1478; Bacteria - 10290; Metazoa - 6090; Fungi - 3965; Plants - 3383; Viruses - 25; Other Eukaryotes - 7617 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G53780.2

Model type
Protein coding
Short Description
peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases
Computational Description
peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein folding, protein catabolic process; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), ATPase, AAA+ type, core (InterPro:IPR003593), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle triple-A 1A (TAIR:AT1G53750.1).
Link
InterPro Scan - TAIR

AT1G53780.3

Model type
Protein coding
Short Description
peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases
Computational Description
peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein folding, protein catabolic process; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle triple-A 1A (TAIR:AT1G53750.1).
Link
InterPro Scan - TAIR

AT1G53785.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR