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ET12696

CSHL Arabidopsis genetrap mutant lines

Original: ET12696

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12696

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25813784 [Map]; Strand: w
      • AT5G64570.1 - [+] show detail - beta-D-xylosidase 4
        Distance: -449; Region: promoter
    Flanking Genome Sequence: ET12696 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGTCTGAA 
    ACATTGTACT CTATAGCCAA ACGAAATCTA TACTTACAAT TTTATTTTAT 
    ACCGAAAAAG GTAAGTTTAT ACGTTGAGAC AAAAAGAAAT AAGTAAATTT 
    TATACGTAGA ATATTCGATG TACACTTTAT GTATAAAGTT TAAACCCACT 
    ATGCTTTATT CCTTTTTGTT GCAAAACTAT ATAAAGTAAA ATCAGATTTA 
    TGATTTAACA AACACATGAC AGAGGTCATA AATCCTAATA CTAGTATCCA 
    CAAACACCGT ATGGTCCGTA TCATTATTTC TTCTCTCTCG AACAGTATCA 
    TCTTTTTCAC ATAATCTTAA TTATAATAGG TCAAAATAAA TAAATAAATG 
    TCACAATAAT TTATATTAAC CACAGATTCT TTAGTGAGAG CGTAGTATTA 
    ACTTACCACT CTTTATTACT ATAAAACCAG TCTCACTAAA CCAAAGCCAA 
    TATCCCAAGA AAAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25813789 [Map]; Strand: w
      • AT5G64570.1 - [+] show detail - beta-D-xylosidase 4
        Distance: -454; Region: promoter
    Flanking Genome Sequence: ET12696 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTATAT 
    ACGAAAACTG CCCTACCGGA TCGAATCAGA TATATTCTTC TCAATTCTAT 
    ATTATACCGA AAAAGGTAAG TTTATACGTT GAGACAAAAA GAAATAAGTA 
    AATTTTATAC GTAGAATATT CGATGTACAC TTTATGTATA AAGTTTAAAC 
    CCACTATGCT TTATTCCTTT TTGTTGCAAA ACTATATAAA GTAAAATCAG 
    ATTTATGATT TAACAAACAC ATGACAGAGG TCATAAATCC TAATACTAGT 
    ATCCACAAAC ACCGTATGGT CCGTATCATT ATTTCAT

AT5G64570.1

Model type
Protein coding
Short Description
beta-D-xylosidase 4
Curator Summary
Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.
Computational Description
beta-D-xylosidase 4 (XYL4); FUNCTIONS IN: xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: xylan catabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-xylosidase 3 (TAIR:AT5G09730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR