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ET12700

CSHL Arabidopsis genetrap mutant lines

Original: ET12700

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12700

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET12700 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAAGTGACA GGTTTAATCT 
    TGTAATCGAA TTTAACA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5945206 [Map]; Strand: c
      • AT5G17930.1 - [+] show detail - MIF4G domain-containing protein / MA3 domain-containing protein
        Distance: -776; Region: promoter
      • AT5G17950.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -247; Region: promoter
    Flanking Genome Sequence: ET12700 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAAGTG ACAAGGTTTA 
    ATCTTGTAAT CTAATTTAAC ATTATTTTCA AAAAAAAAAA AAAAAAAAAA 
    AAATCTTTTG AAGAAAAAGT TTTTTCTTAT TTAAAAAAAA ATTTCAAGCC 
    CCCGGTTTTC CGGGGGGGGT TAAAAAAGGG GC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 11806508 [Map]; Strand: w
      • AT3G30170.1 - [+] show detail - transposable element gene
        Distance: 9292; Region: intergenic
      • AT3G30180.1 - [+] show detail - brassinosteroid-6-oxidase 2
        Distance: -4229; Region: intergenic
    Flanking Genome Sequence: ET12700 - 5-prime edge 
    GACAAAAGAT TAAGATGTTT AAAATATTCA CAATACCTAA AATCACAATA 
    GAAAAAATAG GAATATGGGC CCTTTATAAG GAAAGGGAAA ATATTTAAAA 
    ACGGGAAATA ATTTTCAATA AAAATATTTA TTAATATAAT TGGAATTAAA 
    ATAAAATCTT AAAAACAACA ACTTGAATTT ACATATTTCG ATCCAATCAA 
    CTTTCTTCTT CAT

AT3G30170.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
Mutator-like transposase family, has a 3.2e-51 P-value blast match to GB:AAA21566 mudrA of transposon="MuDR" (MuDr-element) (Zea mays)
Link
InterPro Scan - TAIR

AT3G30180.1

Model type
Protein coding
Short Description
brassinosteroid-6-oxidase 2
Curator Summary
Encodes a cytochrome p450 enzyme that catalyzes the last reaction in the production of brassinolide. It is capable of converting 6-deoxocastasterone into castasterone, a C-6 oxidation, as well as the further conversion of castasterone into brassinolide by a Baeyer-Villinger oxidation reaction at C-6, resulting in the formation of an unusual seven-membered lactone ring. The enzyme possesses high affinity for both C28- and C27-Brassinosteroids. The expression of the gene using a CYP85A2 promoter:LUC fusion construct was shown to be under circadian and light control.
Computational Description
brassinosteroid-6-oxidase 2 (BR6OX2); FUNCTIONS IN: monooxygenase activity, oxygen binding; INVOLVED IN: response to light stimulus, circadian rhythm, brassinosteroid biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: brassinosteroid-6-oxidase 1 (TAIR:AT5G38970.1); Has 29372 Blast hits to 29308 proteins in 1622 species: Archae - 48; Bacteria - 4489; Metazoa - 10449; Fungi - 5456; Plants - 7735; Viruses - 3; Other Eukaryotes - 1192 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G17930.1

Model type
Protein coding
Short Description
MIF4G domain-containing protein / MA3 domain-containing protein
Computational Description
MIF4G domain-containing protein / MA3 domain-containing protein; FUNCTIONS IN: binding; INVOLVED IN: RNA metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890); BEST Arabidopsis thaliana protein match is: MIF4G domain-containing protein / MA3 domain-containing protein (TAIR:AT1G80930.1); Has 15897 Blast hits to 11268 proteins in 674 species: Archae - 101; Bacteria - 729; Metazoa - 6896; Fungi - 1567; Plants - 651; Viruses - 76; Other Eukaryotes - 5877 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G17950.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR