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ET12708

CSHL Arabidopsis genetrap mutant lines

Original: ET12708

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12708

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17494114 [Map]; Strand: c
      • AT3G47470.1 - [+] show detail - light-harvesting chlorophyll-protein complex I subunit A4
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: ET12708 - 5-prime edge 
    CTTTCTCCCT TACATGACCT TAAACAATTT GTAACTTCTT TCAAGAACCT 
    AACACATTGT CAAAACTGTT GTGGTAGGAA TCATAAATGT TCCTGAGTGG 
    TACGATGCTG GGAAAGAGCA GTATTTTGCA TCGTCGTCGA CATTGTTTGT 
    GATCGAATTC ATATTGTTTC ATTACGTTGA GATCAGACGG TGGCAAGACA 
    TCAAGAACCC GGGAAGTGTG AACCAAGACC CTATCTTTAA GCAATACAGC 
    TTACCTAAGG GTGAAGTTGG TTACCCTGGT GGAATCTTTA ACCCGCTTAA 
    CTTTGCTCCT ACGCAAGAGG CCAAGGAGAA AGAGCTAGCA AACGGTAAGC 
    TTAGACTAAT CCGCTATTCT TGTGATGCAA GAAACTGCTA GTTGTAGTTA 
    AAAGACTTAA AAGACATTTT TGTTGTTGTT GCAGGGAGGT TGGCGATGTT 
    GGCATTCTTA GGGTTTGTGG TTCAACACAA TGTGACTGGA AAAGGACCAT 
    TTGAGAATCT GTTGCAGCAC TTGTCTGACC CATGGCACAA CACTATTGTC 
    CAAACCTTCA ACTAAAGAGT GAAGACAGAC TTATGATCTC ATACCTATCT 
    ATCTTCCATC A

AT3G47470.1

Model type
Protein coding
Short Description
light-harvesting chlorophyll-protein complex I subunit A4
Curator Summary
Encodes a chlorophyll a/b-binding protein that is more similar to the PSI Cab proteins than the PSII cab proteins. The predicted protein is about 20 amino acids shorter than most known Cab proteins.
Computational Description
light-harvesting chlorophyll-protein complex I subunit A4 (LHCA4); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to karrikin, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 2 (TAIR:AT3G61470.1); Has 2336 Blast hits to 2249 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1967; Viruses - 0; Other Eukaryotes - 366 (source: NCBI BLink).
Link
InterPro Scan - TAIR