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ET12710

CSHL Arabidopsis genetrap mutant lines

Original: ET12710

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12710

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19448365 [Map]; Strand: c
      • AT2G47410.2 - [+] show detail - WD40/YVTN repeat-like-containing domain;Bromodomain
        Distance: 0; Region: exon1 (5UTR)
      • AT2G47410.1 - [+] show detail - WD40/YVTN repeat-like-containing domain;Bromodomain
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET12710 - 5-prime edge 
    CTGGTTAGAC ATCGGCCAGG TCGAGCGAAC AAGGAAGAAC GAAACAACAA 
    GACCACTGAC TCTTCTTTTT CTTTTTTTCT TACCGCTGTG AGATTTTTCT 
    GGAAAATCTG GAAAATACAA ATTTGAGAAT AGGAAA

AT2G47410.1

Model type
Protein coding
Short Description
WD40/YVTN repeat-like-containing domain;Bromodomain
Computational Description
WD40/YVTN repeat-like-containing domain;Bromodomain; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Bromodomain (InterPro:IPR001487), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD40/YVTN repeat-like-containing domain;Bromodomain (TAIR:AT5G49430.1); Has 67123 Blast hits to 29366 proteins in 847 species: Archae - 50; Bacteria - 8348; Metazoa - 26818; Fungi - 14890; Plants - 8157; Viruses - 8; Other Eukaryotes - 8852 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47410.2

Model type
Protein coding
Short Description
WD40/YVTN repeat-like-containing domain;Bromodomain
Computational Description
WD40/YVTN repeat-like-containing domain;Bromodomain; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Bromodomain (InterPro:IPR001487), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD40/YVTN repeat-like-containing domain;Bromodomain (TAIR:AT5G49430.1).
Link
InterPro Scan - TAIR