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ET12712

CSHL Arabidopsis genetrap mutant lines

Original: ET12712

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12712

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24592610 [Map]; Strand: w
      • AT1G66050.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: 0; Region: exon9 (CDS)
    Flanking Genome Sequence: ET12712 - 3-prime edge 
    ATGAAACGGT AGAGGTTTTT ACCGACCGTT ACCGACCGTT TTCATCCTAA 
    GCTGAGAGAC TTGTACCACC AACAGAGTTT TTATCCATCT TAATCTTCTT 
    AGTTGGAGGT TCGGATTCTT CTTCTCCTTC TTCTACCGAA ATGTTTGATG 
    ACTCCGCAAC TTCAGCCTCT TCCTCACTCT TCTTAAAATT CTCTATTATC 
    TCCATCATCT CTCTGTTCAC CTGTTTTATT GGACATTTGT GATTAGCCAA 
    AGTTAATCAC AACAAAACTG GGAAGAACTA GAATGTAAGA AGAAGAGTTG 
    GTTTCTGTTT TTTACCTGCG GGTTTTGGAG AAACTCGGAG AGATCGGTTG 
    TGCAGCAAGG GCAGGTCATG ATGTTTTTCT TTGCACGTAG TTTACGCACG 
    CCATTGCTTC TGTCTCTCAG TTGAGTTATC CCAGCAAACT TCGCTTCTAA 
    GCATGCTTTG CAGAAGTTGT GTGCACAAGG TGTCGTCACT GGAAGACTCA 
    GCACTTTCCG ACAGATTTGG CAACTGAATT CTGTGTCAAA TAAAACA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24583761 [Map]; Strand: c
      • AT1G66030.1 - [+] show detail - cytochrome P450, family 96, subfamily A, polypeptide 14 pseudogene
        Distance: 109; Region: intergenic
      • AT1G66040.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: 59; Region: intergenic
    Flanking Genome Sequence: ET12712 - 5-prime edge 
    TCTTTCTCCC TGTTCAGCTC TTTCGACATT CCAAACAAAC TTCCTTTCTT 
    TTTTTGGTAA TATTCCGCAA ACGTCTGAAG TTATGCATTG CGACTTATAC 
    ATTTTCATTT CAAAACTTAT CAGAAATTGT TCGATTCTTT TTTTCCGTTA 
    GATATAAATT CAACATTACT ACATTAGCAC ATTACTTTAA ATATTCGTGG 
    TCCTTGAAAA GAGGCACAAG CCCGAGTTTG AGCTTGCTTC TTG

AT1G66030.1

Model type
Protein coding
Short Description
cytochrome P450, family 96, subfamily A, polypeptide 14 pseudogene
Curator Summary
encodes a protein with cytochrome P450 domain
Computational Description
"cytochrome P450, family 96, subfamily A, polypeptide 14 pseudogene" (CYP96A14P); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 96, subfamily A, polypeptide 8 (TAIR:AT1G47620.1); Has 443 Blast hits to 443 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 443; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G66040.1

Model type
Protein coding
Short Description
Zinc finger (C3HC4-type RING finger) family protein
Curator Summary
predicted to encode a protein with an N-terminal PHD domain and two RING domains surrounding an SRA domain. Attempts to isolate ORTH4/VIM4 cDNA through RT-PCR were unsuccessful and analysis of the expression of this gene is difficult since it shares 99% nucleotide identity with ORTH5/VIM2.
Computational Description
VARIANT IN METHYLATION 4 (VIM4); FUNCTIONS IN: zinc ion binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), SRA-YDG (InterPro:IPR003105), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G66050.1); Has 6297 Blast hits to 5041 proteins in 427 species: Archae - 0; Bacteria - 14; Metazoa - 4562; Fungi - 413; Plants - 874; Viruses - 19; Other Eukaryotes - 415 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G66050.1

Model type
Protein coding
Short Description
Zinc finger (C3HC4-type RING finger) family protein
Curator Summary
Encodes a protein that is similar to VIM1 but is not involved in cytosine methylation. This protein has an N-terminal PHD domain and two RING domains surrounding an SRA domain. ORTH5/VIM2 has E3 ubiquitin ligase activity in vitro.
Computational Description
VARIANT IN METHYLATION 2 (VIM2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), SRA-YDG (InterPro:IPR003105), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G66040.1); Has 6271 Blast hits to 5010 proteins in 428 species: Archae - 0; Bacteria - 14; Metazoa - 4526; Fungi - 407; Plants - 903; Viruses - 19; Other Eukaryotes - 402 (source: NCBI BLink).
Link
InterPro Scan - TAIR