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ET12714

CSHL Arabidopsis genetrap mutant lines

Original: ET12714

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12714

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 108379 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: intron1 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET12714 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    ACTTAGCATA ACGAATCAGA CAGACAAAAA GTGTCTGGAT CCGTAGAGCA 
    AAGTGTTGTC GTGTCTTTGA CAAAGTTCTT TGTTTGCCTA AACCAATTTG 
    TTCATCCGAT AGAATGAATT GCATTCCGTT GTTACTATCA TCCAAACCGG 
    AGATGTCAAG CCCTAACCCT CAAGTAGTAT TTCTTAGAGA GCCATGAATT 
    GTTTGTTTAG ATCCAATTAG AAGAAGGTTT AGTTGACTGT GATGATTGTT 
    TGTGTTTTTG GTGGCAGGAC CAGGAGGCGC AGAGAGGGAG GATGCAGGAG 
    ATAGATCTTA GTGTTCACAC TATAAAGTCC CATGGAGGAA GAGTCGCTTC 
    TAAACACAAG CACGATTGGA TCATACTCGT CATCTTGATT GCCATCGAGA 
    TAGGCTTGAA CCTCATCTCT CCTTTCTACC GCTACGTGGG AAAAGACATG 
    ATGACTGACC TCAAGTACCC TTTCAAGGAC AACACCGTAC CTATCTGGTC 
    TGTCCCTGTG TACGCTGTGC TTCTTCCCAT CATAGTGTTC GTCTGCTTCT 
    ACCTGAAGAG GACATGTGTG TACAATCTGC ACCACAGCAT CCTCGGGCTG 
    CTCTTCGCCG TCTTGATAAC TGGTGTCATC ACTGACTCCA TCAAGGTAGC 
    CACCGGACGC CCTCGTCCTA ACTTCTACTG GCGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 108456 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: intron1 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET12714 - 5-prime edge 
    CCACTGTTTC ATTAACAATG TTTTCGTTGA CTCTATTTAA CTACTTTATT 
    TTCAATGTTA GGATTTTTAA AATGATAAAG AAAAAAGGAG TAGAACAGAG 
    AATAGTCGAT TGAGGTTACC TGAGAATTGC GCCAGAATAA GAGAGAAGAG 
    AAAAACGACC CTATTGTCAT CAGAAAGTGA AGATCTCGAC TAAGAGATGA 
    GATGAGGTTA AAAAGAAATG TGGATCTCGA AACTTAGGAG TAAAACAGAG 
    GAATTGATCT AACGAAGACT ATAGATAAAT AGTCCGATGA GGAGGAGGTA 
    GAAGACGCGT TGTTAAACTT GCGAGTTTTG TTTTGTTTCC CAACTTGACG 
    GTTTGATAGA AGAATAAGAA GAAAACAGAG AGAGACATGA TTAGAAACTC 
    CTCTTCCTCT TGAATTTTGA CTTTTGACTT TTCAGTTATC GCCGGTCTGA 
    TATGGCCTTC GTCTTTC

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR