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ET12724

CSHL Arabidopsis genetrap mutant lines

Original: ET12724

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12724

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23426403 [Map]; Strand: w
      • AT3G63445.2 - [+] show detail - other RNA
        Distance: -65; Region: promoter
      • AT3G63445.3 - [+] show detail - other RNA
        Distance: -175; Region: promoter
      • AT3G63445.1 - [+] show detail - other RNA
        Distance: -41; Region: promoter
      • AT3G63440.1 - [+] show detail - cytokinin oxidase/dehydrogenase 6
        Distance: 0; Region: exon5 (3UTR)
    Flanking Genome Sequence: ET12724 - 5-prime edge 
    CTTTCTCCCT GTTTCCGATG ATGCGTATCC ATATATGTAG TATCCCAATT 
    TCGTACACAA CAGGGAAGAT GAAGAAGAAG AAGAAAGAAC CAATACGCAC 
    CAACCAAGTA TTCATTCATC CCCCCATTTG CAAAGGTTGG GCTCTAATGA 
    TGTGGGCTTA TCTATTCTCT TAACTTTCTT TCAGGCCCAA TAGGTCCCCA 
    AGTTCTATTT ATGTGGTCCA TTTACAAAAC GACAGACACG AACTACTAAA 
    GATTCCAAGC CGTTAACTTT TCTTTGTTAC TTACTCCTAT GGACAAAGCA 
    AGCAAATGAT GGCTTTCAAT TATAGCTATT AATGATCTTC ACAAGTGAAA 
    ATTTCGCTAT CTTGTAACAA TTAACTACTA GACTCTTGAG GTAATAGATA 
    TGATGTTCCC TCAAAGTAAT TACAACTTAA CTTAGATAAA TATATAGTGA 
    TTGAATACAA ACAAAAAAAT AGACAAACCA ACCTTTCTTT TTCTGGTGAA 
    TAATCAATCT CTTCTTGTGC TTTTTTTATA TATGATATAA TTAATATTAA 
    GGTCACCTGT GGGGAGTGGT CCATTGCATA ACATTCACGG GACTCATTTA 
    CTAACACTCT TGTTTAATGA ATGGTACAAC AACCAACCTT CCCCC

AT3G63440.1

Model type
Protein coding
Short Description
cytokinin oxidase/dehydrogenase 6
Curator Summary
This gene used to be called AtCKX7. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.
Computational Description
cytokinin oxidase/dehydrogenase 6 (CKX6); CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase/dehydrogenase 1 (TAIR:AT2G41510.1); Has 6490 Blast hits to 6485 proteins in 1279 species: Archae - 163; Bacteria - 4080; Metazoa - 140; Fungi - 1069; Plants - 530; Viruses - 0; Other Eukaryotes - 508 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63445.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR

AT3G63445.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR

AT3G63445.3

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G63440
Link
InterPro Scan - TAIR