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ET12725

CSHL Arabidopsis genetrap mutant lines

Original: ET12725

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12725

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3658729 [Map]; Strand: w
      • AT4G06635.1 - [+] show detail - transposable element gene
        Distance: 1320; Region: intergenic
      • AT4G06598.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) trans...
        Distance: -4756; Region: intergenic
    Flanking Genome Sequence: ET12725 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCAGGATA 
    TCAACGTAAA GCATAAGATA TAAGTCATGA CCATGTTTAC AACATTTCAT 
    AAAAATCCAT TAAATCTACC ACTCTATCAC GAAATTCTTG CTAGCATCTC 
    CTTCTGCATC ATTTTATATT CTTCAAGTCC TCTACTCGTT TTCTTTTAAC 
    TGAGGTACAT CTTGTCTGGT TCAAAGCTTC AAAACTCTAC AAAACTACAA 
    AGATGTTTAC TATGAACATA CATTCATATA TTCCCATTCA AAGTTCCAAA 
    CTATCGATTA CAACCTCTAC AATGCAAAGT GTGGTAAGCA CATAACCAGA 
    GTAAACATGT GTCATAGAAA CGAGATGTGG TCTTGTTATG GCTTCTAAAT 
    TAATGAGATT TTTGATATAC TATCGTCGGA CAAGACTTGG AACTTGATCC 
    AATGGAACAG CTTGTAGCGG AGGAAGCTTT GGCGGAACCA ACCGGTCCTA 
    TGACTCGTTC GAAGACTAGA CTTCTCAACC AAGCCGTTAG CGGACTTCTT 
    AACCACTTGG GCAAGTATCC AAATGAAGTC ATACTAACCG TTTGGAACTC 
    GATAGCAGTC CAAGACGATT GGTAATGGGC TAAGTCTTAC TTGGGTACTC 
    TTTTTCCCTT CTAAGGTTTT GTCCCAATGG GTTTTCCTTA GTTGGTTTTT 
    AATGAGGCTT GAGTAACACT TCCAAATCCC CATTATCAAT CCGGCCC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3658811 [Map]; Strand: w
      • AT4G06635.1 - [+] show detail - transposable element gene
        Distance: 1402; Region: intergenic
      • AT4G06598.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) trans...
        Distance: -4674; Region: intergenic
    Flanking Genome Sequence: ET12725 - 5-prime edge 
    TAATTGAGAA TTGTTACGTG TACTATTTCT TTAAGAAAAT TATTTTTCAA 
    TGAATTTATC GCTTTCTCGC ACTTTTTCCT AGTTATAATT TAATTTAATG 
    CAAAATTAGT ATTACTGGAA TACTTTTGAA TCATTTTGCT AACCGACGGT 
    AAATATTAGA AAAGTGACTC TAGGGCCTTT GGCGTTATGT TTAACGTCGG 
    TTCTTAAAGT GGAGAAAAAT ACGTTAACGT CGACCACTAA TATGACACCT 
    TTGTCAATGA CTGGCTGTTA TTAACTCAGT TAATAAGTGA CGTTAAGGTG 
    AAAATAAACC GACGTTAATA GCTTTTTTTC TGTAGTGAAA TTAGAACAAA 
    ACAATTTGAT CTTTATTATC TAAAATAGGC GATAAAAATA AAAAATTAAC 
    CAAGATGATT ATTAGTTTTT TTATCTTTCA TAGATATTTT AAATATAATG 
    ATATAATTAA ACTTGTTAAA AATAGATGAC TTGTGTATTT GGGTTTGAAA 
    GAAGATTATA ACTTGAAGAT AGCGTCTTTG AGAGGGAA

AT4G06598.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT1G58110.2); Has 392 Blast hits to 388 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 8; Plants - 363; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G06635.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR