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ET12729

CSHL Arabidopsis genetrap mutant lines

Original: ET12729

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12729

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15590048 [Map]; Strand: w
      • AT2G37090.1 - [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
        Distance: -791; Region: promoter
    Flanking Genome Sequence: ET12729 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACACAAA TTATTGTTCA 
    TTGGGATTAT ATCTCTAGTC CAACTCCAAG CAATCGAAAT GGGTCCTGCT 
    TTTAAGAACA ACAGTATATG TTTAAGAATA ATAACTTTAT ATATTCTCGA 
    TTTTAAGATC TTTTGACAAA ACCTCCTTTT CGTTAGGAGC GTACTAATTT 
    CCAAGTGTTT GATTAGTGGG GTCTCCGTAA ATTTATTTAG AGTTTCTATC 
    TATTTATTAA TAGCTCAATT AATTAATCTA TACTGTATCT AAACATCAAT 
    TTATATATTT ACTCTTGAGA CCAAAACTGT CAATTTATAA CGTTGGATAG 
    TTTCTTAATT CTTATTATAT ATTTTTCAAA CACTTTTCAA GACTAATCTC 
    CACATTAGGT ACTCTCTCTA GAGATAAAAA TATTTATCAA AAACATTTTT 
    ATTTATTTAT TAAGTAGTAG ATAAACTACT GTGGCAAAAT CGTAAATGTC 
    TAAATGCTGA TGAATTTTTT TTGCTGCTCC AATCTGGTTT A

AT2G37090.1

Model type
Protein coding
Short Description
Nucleotide-diphospho-sugar transferases superfamily protein
Curator Summary
The IRX9 gene encodes a putative family 43 glycosyl transferase. It was coordinately expressed with the cellulose synthase subunits during secondary cell wall formation. Cell wall analysis revealed a decrease in the abundance of xylan in the irx9 mutant, indicating that IRX9 is required for xylan synthesis. Mutants have irregular xylem phenotype suggesting a role in secondary cell wall biosynthesis.
Computational Description
IRREGULAR XYLEM 9 (IRX9); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 43 (InterPro:IPR005027); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT1G27600.2); Has 591 Blast hits to 584 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 323; Fungi - 0; Plants - 254; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR