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ET12731

CSHL Arabidopsis genetrap mutant lines

Original: ET12731

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12731

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22230559 [Map]; Strand: c
      • AT3G60160.1 - [+] show detail - multidrug resistance-associated protein 9
        Distance: -1355; Region: intergenic
      • AT3G60164.1 - [+] show detail
        Distance: 1464; Region: intergenic
    Flanking Genome Sequence: ET12731 - 3-prime edge 
    CTCCCTAGCT GGGACCATAT ATACTCGACT GCGATATTAT TACATCGTAT 
    CTTCGAGTAC TGTATAAACC AATAAATAGT ATCTGACAAA GTTGATCTGG 
    CCGTATGGTC TCAAATCATC ATCAAAGTCA GTAAGTCACC ATAAAACCCA 
    GTTAGGGTTC GAACTCCTTT GAGAAAGTTG AAAGGAAAAG TGGTACAGAA 
    CCACCAAACT AGCTAGATGA CCCGAAAGAC AAAAACCTAT AGTAATAGTA 
    TTGTTTCTTC TACTTATTAC GTGATTAGTT CTCTTTTTTT CATTGATTTT 
    TTGTTGGTAT AGTTCTACTT GCCCTAATTT TTCCTTGAAT TGCTAATTTC 
    AATGCCGACA AAAAAAAAAA CGGGGGTTTT TTTTAGGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22230433 [Map]; Strand: c
      • AT3G60160.1 - [+] show detail - multidrug resistance-associated protein 9
        Distance: -1229; Region: intergenic
      • AT3G60164.1 - [+] show detail
        Distance: 1590; Region: intergenic
    Flanking Genome Sequence: ET12731 - 5-prime edge 
    TTCAGTGGAA AAGGACAGGA TACAATAGAA TCAAATCGGA TTGGAATCTC 
    TCCCATTCAC TCTTTTCCAA AAGTGTCGAG CCTAACTTTC ATATAAGGAA 
    GTCGTTTTCT ACGAACCTCA CACGTTCATC CTTAATTACG CTAAACAACA 
    GAACTCTCAG TACTACCAAG TCTAATCAAA GTTCTACGAA GAAACATATG 
    TATTTAGTTC AACGATTTTA TTATTTTTGA TTATTTCGTA TATACTCTTC 
    GTCAATACGG TTATTTACAC GTGAGCTTGT TATATTTGTA ATTACTGTGT 
    GTGTGTTTTT ACTTCCGTGA GTAACGAGTG AGTAAACAAA TAAATCCGAG 
    TCAGCGATTA GTCGATTACG TACGGTAGTC ACATTTCCAT AAAAATCAAG 
    TTAGTCTAGA CATAAACTAT TTAACTATTA ATG

AT3G60160.1

Model type
Protein coding
Short Description
multidrug resistance-associated protein 9
Curator Summary
member of MRP subfamily
Computational Description
multidrug resistance-associated protein 9 (MRP9); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to nematode; LOCATED IN: integral to membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 15 (TAIR:AT3G60970.1); Has 679468 Blast hits to 355652 proteins in 3947 species: Archae - 12543; Bacteria - 548953; Metazoa - 12500; Fungi - 7906; Plants - 6622; Viruses - 19; Other Eukaryotes - 90925 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60164.1

Model type
Pseudogene
Curator Summary
Pseudogene of AT3G60966; protein binding / zinc ion binding
Link
InterPro Scan - TAIR