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ET12732

CSHL Arabidopsis genetrap mutant lines

Original: ET12732

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12732

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9200898 [Map]; Strand: c
      • AT5G26260.1 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: ET12732 - 3-prime edge 
    GGTAGAGGAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACCTATGA 
    ATCATCTATT TTTGAGGCTG CCGGTTACAA ATGGTTAAGA TAATTTACAC 
    TCTATTCAAT TTCTCTCTTT TTTTTTTTAA AAACCTTAAA TCCCCCCTTT 
    GGGCCAAATT TGGGGGGAAA ACAAAACCGG GGAATTTTTT TTGCCCGGAA 
    GGGGAACCCC AAAGGGGGGG AAAAAAAACC AATTTCCCCT TTCCCCGGGG 
    AAAAAAAAAC CAAAACCCCC CCCAAAGGGG GGGGAAGGAA ATGTTAACCC 
    CAACCCCTTT GCCCCCAACC GGAAGTAAAA AAAAATTTTG CCGGTCCCGG 
    GCCCTTAAAA AGGGGAAGGG GGTTTCCCCA AACCCTTTTC CTTTTTAAAA 
    AAAATTTGGG CCAAGGCCCC TTTCCCTTAC CAATGGAAAA CCCCAAACCC 
    CGGTGGATGG GGTTTGGGAT TGGGATTAAA AGGGGACCCG GGACCCCTTC 
    CCCCCGGCCA AAAAAAGGGG GGGGATCCCC C

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2948615 [Map]; Strand: w
      • AT5G09463.1 - [+] show detail - conserved peptide upstream open reading frame 41
        Distance: -1776; Region: intergenic
      • AT5G09470.1 - [+] show detail - dicarboxylate carrier 3
        Distance: 626; Region: intergenic
    Flanking Genome Sequence: ET12732 - 5-prime edge 
    TTTCAGTGTG AAAAAACAAA ACATAGAAAT TTCAGTTCAC ATAATTGAGA 
    CTGGGCTTTG GTTAGATGAG TGGAGTGGCC ATGCAAAATG GAGCCTAAAC 
    ATGGCCTTGG ACTTATTTTG GGCCATGTCT CAGCTTTGGA TAACTCTTAT 
    ACAATCTCAT AAAACAAACA CCAAATTGCC ACCAGCTTCA AACTCAAGTA 
    AAAAAACTTT AGAAAGATTT TATTTCTCTT TTATAGAGAT AATATGATCA 
    AAGTCAATAA AAGAAAAACA TTATTGTTAA TCTTATTTTC TTATAATTTT 
    TTGCATAATT TCTAATTTAG ATTTTTACAA ACAAACCAAA AAAAATTGGT 
    AATTTACAAG CGATATTTCC TATTT

AT5G09463.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 41
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF41 represents a conserved upstream opening reading frame relative to major ORF AT5G09460.1
Computational Description
conserved peptide upstream open reading frame 41 (CPuORF41); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09470.1

Model type
Protein coding
Short Description
dicarboxylate carrier 3
Curator Summary
Encodes one of the mitochondrial dicarboxylate carriers (DIC): DIC1 (AT2G22500), DIC2 (AT4G24570), DIC3 (AT5G09470).
Computational Description
dicarboxylate carrier 3 (DIC3); FUNCTIONS IN: oxidative phosphorylation uncoupler activity, binding, dicarboxylic acid transmembrane transporter activity; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: cotyledon, leaf, stamen; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: dicarboxylate carrier 2 (TAIR:AT4G24570.1); Has 24086 Blast hits to 12932 proteins in 445 species: Archae - 0; Bacteria - 4; Metazoa - 10227; Fungi - 7035; Plants - 4424; Viruses - 3; Other Eukaryotes - 2393 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G26260.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: hypocotyl, root, callus; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR