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ET12742

CSHL Arabidopsis genetrap mutant lines

Original: ET12742

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12742

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2349898 [Map]; Strand: w
      • AT3G07350.1 - [+] show detail - Protein of unknown function (DUF506)
        Distance: 1107; Region: intergenic
      • AT3G07360.2 - [+] show detail - plant U-box 9
        Distance: -4821; Region: intergenic
    Flanking Genome Sequence: ET12742 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCTA CCGTTTTCAT CCATGGATAA 
    ACAAAAGAAA TAATCGATCT GAAATCAGCG ATTAAAGATC AGAAATACGA 
    CCTTAGTTTT CTATACGTAC ATGTGCACGC ACTACGATCT CTACACTACA 
    CCAAACATTT ACATAGTTAT ACAATCAGCA TTGTACAGTA CAAGAAGTAA 
    ATCTGAAAAA CGATCGAATT TCATTAGTTA AAGAATAATT TATATATTTC 
    CATCGTTTGT ATCATCGAAA ACAATAATTT CATCCATAAT TCTATCAACT 
    TGGATTTTTT ATTTGTGTTT ATCAACGAGA TTATACATAA CCTGTTTTGG 
    TTTAGTAGTA ATATAAAATT AGTTCTCGGT AAAGTGTAGT ATAGTAATAT 
    AAAAATAGGC CTCGGCAACG TTTGAAAATT TGACTAGCAA GGTCAATAAA 
    CAAATTATTA TCATATAGTA GTAGATGAGA TCAATGCCGA CTAACTTTAT 
    GCAATGACTC GTTCGACTCA TGAGTCGTGA TCTTTGAGAC CTACTTATAA 
    TATCTTTCTC GGGAATTATA CCATTCGATT TGCAGCATCA CATGATTAAT 
    TAATGCATAA CTGGACCGTC GTAATAGAAT CATTTAATTA ATACAGCAGG 
    AATAAACTTA TTTTATTTAT ATTAACGATG GATATA

AT3G07350.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF506)
Computational Description
Protein of unknown function (DUF506) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT3G25240.1); Has 393 Blast hits to 390 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 391; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G07360.2

Model type
Protein coding
Short Description
plant U-box 9
Curator Summary
The protein that is predicted to be encoded by this gene model lacks the U-box domain identified in the AT3G07360.1 gene model.
Computational Description
plant U-box 9 (PUB9); CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18320.1); Has 1558 Blast hits to 1409 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 155; Plants - 1258; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Link
InterPro Scan - TAIR