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ET12745

CSHL Arabidopsis genetrap mutant lines

Original: ET12745

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12745

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 239923 [Map]; Strand: c
      • AT1G01650.2 - [+] show detail - SIGNAL PEPTIDE PEPTIDASE-LIKE 4
        Distance: -2106; Region: intergenic
      • AT1G01660.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 134; Region: intergenic
    Flanking Genome Sequence: ET12745 - 5-prime edge 
    CCTACTTAAT CCCTGCTCTC TAGTACCCAT TTACAAAAAT GCTTGCTGTT 
    TTGCTCTCTC TCTTGAGATA CGTCAACATA TCTTGGCGTT TGTAAATTGA 
    ATTCACAGAC GTCCCTTTCT ATGGGCCAGT ATTACTAAAG ATGGCCCAAC 
    AAATGACCCA CGAATATGGT AGAGAGTTTA AGCGCACGTG ATATTAAGAT 
    TAACAACGTG ACGCGTGTAC AAAAGGACGA ATTGGCTTTT TTC

AT1G01650.2

Model type
Protein coding
Short Description
SIGNAL PEPTIDE PEPTIDASE-LIKE 4
Computational Description
SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (SPPL4); FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (TAIR:AT1G63690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01660.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT2G45910.1); Has 73160 Blast hits to 42540 proteins in 2253 species: Archae - 866; Bacteria - 9091; Metazoa - 34168; Fungi - 4977; Plants - 4797; Viruses - 224; Other Eukaryotes - 19037 (source: NCBI BLink).
Link
InterPro Scan - TAIR