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ET12748

CSHL Arabidopsis genetrap mutant lines

Original: ET12748

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12748

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 2046355 [Map]; Strand: c
      • AT2G05560.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET12748 - 3-prime edge 
    AAACGGTAGA GGTTTTTACC GACCGTTACC GACCGTTTTC ATCCCTACAT 
    ACAACCCCCT GGACATGGTT GACCCTTCAA AAGTAGAGGA ATTCAGCAAT 
    ATCATTAGAG GACCCTCAGT GTAAGTACAT TATAGTAAAA TGGATTATTT 
    AATATCTGAA TCATCATTTT CCAAGTCTTA AAGTTGTTAT CAAAAAATTT 
    TCTGGATTTA CAGGATTCAC ACTCTTTTCG GGTTTCGCAA AGTGCCCAAC 
    GAGTTTTTTG CGAACCTTCT AACACCTGGT GAATGGGTCG AAAGTTCGGT 
    ACGTTGCATT TATATACGTA CATTCCTTGT TATAAATTGT ACATAGATGA 
    TTAAATTTTT CGTGGAAGTG TACGTACACT GATATATTTT TTGAACATTT 
    CAGCATTTAG AAATGATGGC AATGTTGATG TGGCACAAGA ACGGGGAACA 
    GATGATAGCA AACAGATGTA TTGTATTGGA CATGATGCTG ACGAATCTAC 
    TTACCAAGCA GGTACGCGAC TTCAAGAAGT GTATTAATAA GAACGGGTTC 
    AAATGGGGTA AATTACTGTC CGACATTGCT AATGGAGTTC ACATAAACCC 
    GTGAACCCAA TATGAAGTGG CTGAAGGATG TCGATGTTGT GTATGC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 12724342 [Map]; Strand: w
      • AT1G34740.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon13 (NonCoding)
    Flanking Genome Sequence: ET12748 - 5-prime edge 
    CCTACTTTCT CCCTGGTTGT ATGAGACATT TCTAGCCCTG ATAACAACCT 
    CTATCTGTTG AGCTGGTACA TCGGGCACCA AGACTGTTTT TGCCTTAAAA 
    CCATGAGGAT GGGCATCATC CTGTTCATAG ACAAGTTGCT TCTTCACTTT 
    CTTTGGGACC TTTGGGGACG ATTTTTTTTC TTCTTTTGCT TCGACAACAG 
    CAGCATTGTC TGATTCATCC TGTTAACAAA TATGCTTGTC AACAACAGTT 
    TCATACGTTT TTCTATGTTT AAAATAGGTA CATACATTAT TTTTAGGAAT 
    ATCGGTCTTG TCTGCTTC

AT1G34740.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G05280.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G42730.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653); contains InterPro domain Tetracyclin repressor-like, C-terminal; (InterPro:IPR011075)
Link
InterPro Scan - TAIR

AT2G05560.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At3g24380, At5g36840, At5g35010, At3g42740, At4g05290, At2g14770, At3g43390, At4g08880, At1g34730, At1g27790, At1g34740, At1g27780, At5g36850, At3g42730, At1g52020, At3g24390, At4g05280, At1g25886, At4g03300; this may be a pseudogene.
Link
InterPro Scan - TAIR