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ET12756

CSHL Arabidopsis genetrap mutant lines

Original: ET12756

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12756

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1160642 [Map]; Strand: w
      • AT5G04230.2 - [+] show detail - phenyl alanine ammonia-lyase 3
        Distance: 0; Region: exon1 (5UTR)
      • AT5G04230.1 - [+] show detail - phenyl alanine ammonia-lyase 3
        Distance: -189; Region: promoter
    Flanking Genome Sequence: ET12756 - 3-prime edge 
    GAGGTTTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAG TTTTAAATAA 
    TGTGAGTGAG TGGGTTGGTT TGTGCCTTGG TGGGTATATA TATAGAGGGA 
    AAACAATGGG GTTAACTAGT TGAAATGTTT AAGAACATCT TATTAGTGTT 
    TGATTTAAAA TAATGAATAG GATTATTCGT TTTTAGCCAT TAAAAAACTT 
    ACTTTCTAGT AGATATAAAA AATGCTTCAA ATATTCGATT AGTTTCAACC 
    AGTTTTTTTT TTTTTAAAAC TTTTTCCCGA AAAAGGGGGG AGGGTTCCCC 
    TTAAAATTCT TTTTCAAAAG GGGAACCCCT TGTTTTTCCT CTCAAAAGAA 
    AAAATTTAAA ATGGGGGGGG GAGGGGCCCG CAAAAAAAAA AAAATTGTTT 
    TTGGTAGGGC CCCCCCCTTT TTTTAATGGG GAAGGGGTAA CGGAAACCCT 
    TAAAATTTTT TCCAAGGGGG AATCCTAAAG GGGTTTTTTT TGGAAAAACC 
    CCAAAAATTT TTTTTTTTCC CCCCGAAAAA AAA

AT5G04230.1

Model type
Protein coding
Short Description
phenyl alanine ammonia-lyase 3
Curator Summary
Member of Phenylalanine ammonialyase (PAL) gene family. Differs significantly from PAL1 and PAL2 and other sequenced plant PAL genes. Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).
Computational Description
phenyl alanine ammonia-lyase 3 (PAL3); FUNCTIONS IN: phenylalanine ammonia-lyase activity; INVOLVED IN: response to wounding, defense response; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanine/histidine ammonia-lyase (InterPro:IPR001106), Phenylalanine/histidine ammonia-lyases, active site (InterPro:IPR022313), L-Aspartase-like (InterPro:IPR008948), Phenylalanine ammonia-lyase (InterPro:IPR005922); BEST Arabidopsis thaliana protein match is: phenylalanine ammonia-lyase 4 (TAIR:AT3G10340.1); Has 4848 Blast hits to 4828 proteins in 1399 species: Archae - 40; Bacteria - 2936; Metazoa - 80; Fungi - 127; Plants - 1170; Viruses - 0; Other Eukaryotes - 495 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G04230.2

Model type
Protein coding
Short Description
phenyl alanine ammonia-lyase 3
Curator Summary
Member of Phenylalanine ammonialyase (PAL) gene family. Differs significantly from PAL1 and PAL2 and other sequenced plant PAL genes. Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).
Computational Description
phenyl alanine ammonia-lyase 3 (PAL3); FUNCTIONS IN: phenylalanine ammonia-lyase activity; INVOLVED IN: response to wounding, defense response; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanine/histidine ammonia-lyase (InterPro:IPR001106), Phenylalanine/histidine ammonia-lyases, active site (InterPro:IPR022313), L-Aspartase-like (InterPro:IPR008948), Phenylalanine ammonia-lyase (InterPro:IPR005922); BEST Arabidopsis thaliana protein match is: phenylalanine ammonia-lyase 4 (TAIR:AT3G10340.1).
Link
InterPro Scan - TAIR