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ET12759

CSHL Arabidopsis genetrap mutant lines

Original: ET12759

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12759

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET12759 - 3-prime edge 
    TACCGACCGT TACCGACCGT TTTCAAGCCT AGGCGGGTGC ATCGTTTGTC 
    TTCGTGAGTA CAGTGGTTAA TAGAACCGGA GTTGGCTACT CGTGGTTCTG 
    GGTTGTTGAA GGATGGGTTG AGCTTAGTTT TTTTGTCAGC CTCCACGAGT 
    CTTACTCACC GGACCGGTTT GATTGTTGTC TCGGAGGTGG TTTCAGAGTT 
    GAATCTTCAG TGGTAGAGGG TTAGATCTGT CCGTTCTATT TTTGCTAGGT 
    CAAGAATTCA AAGTTGGGGT TCTGGTATGT TGGAGGTGGC TCTTCTCCGG 
    GAGGTTTGAT GAGGGTCATG GCTCGACGGC GGTTTCAGAT CAGAGAAAGG 
    ATCCAAATAC TCCATTCTCT GATTTTGTTC ATCTCACTCG A

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 6786303 [Map]; Strand: c
      • AT4G11130.1 - [+] show detail - RNA-dependent RNA polymerase 2
        Distance: 1863; Region: intergenic
      • AT4G11140.1 - [+] show detail - cytokinin response factor 1
        Distance: 8473; Region: intergenic
    Flanking Genome Sequence: ET12759 - 5-prime edge 
    CCTACTTTCT CCCTGCACCC GCCATCCCGT TAGCAACTTC CGCCGCAGAT 
    CGAGGCTTTC CACTAACCGG TGAGCAGAGA GAAGCTTCAT GTCGTTCCTC 
    CAGCGTCCAT AACCAGAAGA GCCACCGGCG AAGTCTCTCG AATCCGGCAG 
    GGACACCACG AACGCATCAC CAACAGGAAG TCCGTCGTCG ACAAATTGCT 
    GGCTCACTCC CGACTTCCAT TTTGCAAACC CACCCTACAA TTAAGATCAA 
    GAAACCCAGA AACAGATCTA GAACTTTACT TTTGTCTTCA AGAGAGAGAG 
    AACAGCTCCA AAATGTTCCT TATTCTCCAA ACGCATCCCA ATCTTAAAAA 
    TACATGAAAA AAACTTTAAA GGAAGAATAT AAAGACTTTA AAAGCTATAC 
    CTAAATCATA CCAAAAATCG GTAAAAATCG AGGTATATCA GATGTGGCAC 
    ATATTAATCA AACTCACAAC TCTCTTTCGT ATCGGTATTC GTTTATGCCA 
    CTTGCTTTGC TTTCTCATTT CTTTATCTCC TCTCAATGTT AGCCTTAATA 
    CTATGTAATC GTCAACTACG ACATATTGAA AACAAAACCA AACCAACACA 
    CAATACTTGA ACTTGAGAAT ATATTAATTC ACCAAAACCT TGCACGATTA 
    TTATAGTTAT TCGCATAAAT GACTAAAACT ATTATATGTG AAGCAATTTA 
    CCCATACACC AAACCCTTCT TACTATCCTA AGCATTCTCC TTCAACGCAT

AT4G11130.1

Model type
Protein coding
Short Description
RNA-dependent RNA polymerase 2
Curator Summary
Encodes RNA-dependent RNA polymerase that is required for endogenous siRNA (but not miRNA) formation. Nomenclature according to Xie, et al. (2004).
Computational Description
RNA-dependent RNA polymerase 2 (RDR2); CONTAINS InterPro DOMAIN/s: RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855); BEST Arabidopsis thaliana protein match is: RNA-dependent RNA polymerase 1 (TAIR:AT1G14790.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G11140.1

Model type
Protein coding
Short Description
cytokinin response factor 1
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1).
Computational Description
cytokinin response factor 1 (CRF1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 2 (TAIR:AT4G23750.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR