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ET12781

CSHL Arabidopsis genetrap mutant lines

Original: ET12781

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12781

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9939213 [Map]; Strand: w
      • AT4G17890.1 - [+] show detail - ARF-GAP domain 8
        Distance: 0; Region: exon7 (3UTR)
      • AT4G17890.2 - [+] show detail - ARF-GAP domain 8
        Distance: 0; Region: exon6 (3UTR)
      • AT4G17895.1 - [+] show detail - ubiquitin-specific protease 20
        Distance: -482; Region: promoter
    Flanking Genome Sequence: ET12781 - 5-prime edge 
    GGTAAGAAGA CCACGAGTCT CTCACATGTT TTTGATATTG ACAGAGAAAA 
    AAAAGTAAGA AAGAAGCTTT GTCGGAAAAC TTCCAATGAG GTTCACGTTT 
    CTCTGTTTTT ATTTTATAGA ACTTTTTTTT GAAAACTATT GAGACGTGGC 
    TATTGTTGTT ATCATCAAAA TCTATATTGA TACTATTATA CTCGATATGC 
    TATAGACTTT ATCAAAAAAA CCTTTGTTTG TTTGCAAGAA AGTGGATTTT 
    TATTCAAATT TACTTGCGAT GATTACAATG CCAATTGGTT ATGCAAGATA 
    TTACTCAATA TGTTCAAGAT TTTTCACTTT TAATAAGGAA AATAATATAC 
    GTCAAAAAAA TTTCCTAA

AT4G17890.1

Model type
Protein coding
Short Description
ARF-GAP domain 8
Curator Summary
A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.
Computational Description
ARF-GAP domain 8 (AGD8); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 9 (TAIR:AT5G46750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G17890.2

Model type
Protein coding
Short Description
ARF-GAP domain 8
Curator Summary
A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.
Computational Description
ARF-GAP domain 8 (AGD8); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 9 (TAIR:AT5G46750.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G17895.1

Model type
Protein coding
Short Description
ubiquitin-specific protease 20
Curator Summary
Encodes a ubiquitin-specific protease.
Computational Description
ubiquitin-specific protease 20 (UBP20); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 21 (TAIR:AT5G46740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR