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ET12791

CSHL Arabidopsis genetrap mutant lines

Original: ET12791

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12791

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29322056 [Map]; Strand: c
      • AT1G77990.1 - [+] show detail - STAS domain / Sulfate transporter family
        Distance: 0; Region: intron4 (CDS)
      • AT1G77992.1 - [+] show detail - other RNA
        Distance: -355; Region: promoter
    Flanking Genome Sequence: ET12791 - 3-prime edge 
    CCGATGACAA AGTTCAGAGG TTGCCACTGA AAAAAAAGTA ATTAAGAATT 
    AAAACAAATA TTTAACGAAA AAAAGACTTG AAAAGAAGAA GACAAAAAGA 
    AAAAAGAAAA AACGGTTCGT ACCGGATGGT GAAGCGAGTG GAAAACCGAA 
    GATAAAACCG AAACTACATC GGTTTTATTG GTAAAATGAG TCAAACCAAA 
    TAAACCTTTA AGTTGTTGTA AACCAATGAC AATTGCAGCA CCAGCCATGA 
    ACCCAACAAG TGCAGCATGT GACAAAAAGT CCACCAAAAA CCCTAACCTG 
    ATACATCATA ATAACATATT TTTATCAGAT TAATACACCT TTGTCGTCGT 
    CGTTGGCCCA AAACAACCAT CATAATATTA TATGAATCCC CT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29321956 [Map]; Strand: c
      • AT1G77990.1 - [+] show detail - STAS domain / Sulfate transporter family
        Distance: 0; Region: intron5 (CDS)
      • AT1G77992.1 - [+] show detail - other RNA
        Distance: -455; Region: promoter
    Flanking Genome Sequence: ET12791 - 5-prime edge 
    TCCTACTTTA TCCCTGGTCA TCGGTAGCTC ATTCCTCATC TTCATCCTCC 
    TAGCTAGATT TATCGTAAGT AAACCAAAAT TTGCCGGGCA TTTGTAATGT 
    ATATCCACTT CACAATAGTT TTACTTTTGA ATTCAATTTT TTAATAATGA 
    TTTTTGTAAA TACAGGGAAA AAGAAACAAT AAGTTGTTTT GGATTCCAGC 
    GATGGCACCG CTAATATCAG TTGTATTAGC AACACTAATA GTGTATTTAT 
    CCAATGCTGA GTCACGAGGG GTTAAAATTG TTAAACACAT TAAACCAGGG 
    TTTAACCAGC TTTCGGTTAA CCAATTACAA TTCAAAAGTC CACATCTTGG 
    CCAAATCGCC AAAATTGGTC TTATTTCTGC AATCATCGCC CTAACGGTTA 
    GAAATAAATA TATGCTCTTA CTTATAAATT ATTAACCACT GATCAATCAG 
    TAATTAATTG ATTTAAAATG AATGAAATAA TACAGGAAGC ATTCGCAGTG 
    GGAAGATCGT TTGCGACGAT CAAAGGATAT CGTTTGGATG GGAACAAAGA 
    GATGATGGCT ATGGGATTTA TGAATATCGC TGGTTCTTTA TCTTCTTGCT 
    ATGTAGCTAC CGGTAAATTC ACTTTTCTTT T

AT1G77990.1

Model type
Protein coding
Short Description
STAS domain / Sulfate transporter family
Curator Summary
cDNA encoding a sulfate transporter.
Computational Description
AST56; FUNCTIONS IN: sulfate transmembrane transporter activity; INVOLVED IN: sulfate transport, transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Sulphate transporter (InterPro:IPR011547), Sulphate transporter/antisigma-factor antagonist STAS (InterPro:IPR002645), Sulphate anion transporter, conserved site (InterPro:IPR018045), Sulphate anion transporter (InterPro:IPR001902); BEST Arabidopsis thaliana protein match is: slufate transporter 2;1 (TAIR:AT5G10180.1); Has 9792 Blast hits to 9696 proteins in 1853 species: Archae - 35; Bacteria - 5971; Metazoa - 1157; Fungi - 422; Plants - 555; Viruses - 0; Other Eukaryotes - 1652 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G77992.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G77990
Link
InterPro Scan - TAIR