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ET12792

CSHL Arabidopsis genetrap mutant lines

Original: ET12792

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12792

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18416575 [Map]; Strand: c
      • AT5G45450.1 - [+] show detail - Oligopeptide transporter OPT superfamily protein
        Distance: 764; Region: intergenic
      • AT5G45460.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: Protein of unkno...
        Distance: 39; Region: intergenic
    Flanking Genome Sequence: ET12792 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGC 
    AATTTCACAT ACATGTCATA ACTTTTGTTG AATTATGAAA GCATATTTGG 
    GATAATTTTC ATCACAAAAA GCATACAAAT GTCATCATCT CTATGCATAA 
    AAAAAGAGTT CATTGTTCTG ATCAGAAGAA AGTAGTAAGA AATGCAAATG 
    CAGAATGAAT TTAGATACCG GGGAATGTTT CTCTTGCTCA CTCTCACTCG 
    CCTATAATGA GTTTGGCTCT GGCATCTCCT TTGTTGATCT GGAACTGATC 
    TGTTAGTCCA AAGTGAGCCA TTAGAAGCCA CACGAAGTTT ATGAGCTCTC 
    CGCCTCTGCT GATTTGCTCC ACGTGGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18416488 [Map]; Strand: c
      • AT5G45450.1 - [+] show detail - Oligopeptide transporter OPT superfamily protein
        Distance: 677; Region: intergenic
      • AT5G45460.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: Protein of unkno...
        Distance: 126; Region: intergenic
    Flanking Genome Sequence: ET12792 - 5-prime edge 
    TTGCTTTAAG AAGAGTGAAG TATCTCATTG TACCTTGACC AAAAACTCAA 
    GAATTCTGTG AGAGAAGAAG CCGCTAGAAG AAAGCTTTTG GCCGCCATTG 
    AAATCAACTA CACACAGACA TAGCCTAAAG ATGTTGCATT GTAAAAGTTG 
    AATCAGTCTA ATTTATCTTC GATTCGACAG AAGCATGAAG AAACAATCCG 
    CAATCAAATC CACTGAAATC AAAACCCGAA ACACACATTG AATCTCACAA 
    ACAAAGTAAC GCTTTTCATC TCACTCGAC

AT5G45450.1

Model type
Protein coding
Short Description
Oligopeptide transporter OPT superfamily protein
Computational Description
Oligopeptide transporter OPT superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YELLOW STRIPE like 5 (TAIR:AT3G17650.1); Has 958 Blast hits to 958 proteins in 298 species: Archae - 10; Bacteria - 365; Metazoa - 0; Fungi - 177; Plants - 389; Viruses - 1; Other Eukaryotes - 16 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G45460.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF594) (TAIR:AT5G45470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR