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ET12826

CSHL Arabidopsis genetrap mutant lines

Original: ET12826

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12826

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1700922 [Map]; Strand: c
      • AT1G05670.1 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G05670.2 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET12826 - 3-prime edge 
    TCGCTGATTT TTCGAAAACC CCCAAAGTCT CTGCACCAAA AAAAATTGAC 
    CCGACTCAAG CGGGTGATGG GTTTCGACGT ATGTTGCAAT GAGATTGAGA 
    ACTTGAATAA AAATACAAAC TTTTTGTTTC TCTCTTTCTC TGTCTCTGAA 
    GAGAAATTCT GAAAATGAAG GGCACGGCGT GCGATTAAAG ACGACGATCG 
    ATTTGGGGAT TTTGGTTGAA ACGGCGTCGT ATATGCGAAC GGTCATTTTA 
    ACGAACAAAA CGATTCGCTT TTGAGCTAAA ACCACTTAAA AGCCCATTAA 
    GAATATCACT TAGGCCCATA TTAAAC

AT1G05670.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR-like) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G01110.1); Has 76919 Blast hits to 23782 proteins in 722 species: Archae - 3; Bacteria - 657; Metazoa - 3612; Fungi - 1352; Plants - 68766; Viruses - 129; Other Eukaryotes - 2400 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05670.2

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR-like) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G01110.1); Has 76919 Blast hits to 23782 proteins in 722 species: Archae - 3; Bacteria - 657; Metazoa - 3612; Fungi - 1352; Plants - 68766; Viruses - 129; Other Eukaryotes - 2400 (source: NCBI BLink).
Link
InterPro Scan - TAIR