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ET12830

CSHL Arabidopsis genetrap mutant lines

Original: ET12830

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12830

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2956628 [Map]; Strand: w
      • AT3G09640.1 - [+] show detail - ascorbate peroxidase 2
        Distance: 0; Region: exon2 (CDS)
      • AT3G09640.2 - [+] show detail - ascorbate peroxidase 2
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: ET12830 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAACGGCAA 
    TATCAAGACC ATTGTTGGCA TCATGGGCTA GCTCTTGGGG ATGCCTTATC 
    GTCCCAAACG GTCCTCCTGT CTTCGTCTTC ACATCAAATG TCCCAGCCGA 
    GTGCCATCTG CAAATTTCCG CCAACAAAAT ATGCTCTGAG AAGCCATCAA 
    TCGAACAACT CAGTACTCAC AGTAACAGAA AAGACTGGAA CCAGAGAGAG 
    GATCTTACGC AAGACGGAGG ACGATGGGAG CACAGTGCTT CTCGGCAATA 
    AGACCACGGA GCTTCCTCTT GCATCTCTGA ACAGCTTTCT TGTACTCTTC 
    TTTCACTTCC GGGTAACTCT TCTTCACCAT TTTTTTCAAA TTCGCTTCCT 
    TCTGGAAATC GTTGAAGGCT TTAAAACCTA AAGAGAATGG AGAACCTATC 
    GAGATCAATA AGATTACAAG AACATACAAA CCTTTAGTTT AAACACAATG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2956691 [Map]; Strand: w
      • AT3G09640.1 - [+] show detail - ascorbate peroxidase 2
        Distance: 0; Region: exon2 (CDS)
      • AT3G09640.2 - [+] show detail - ascorbate peroxidase 2
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: ET12830 - 5-prime edge 
    TCCTACTTTC TCCCTGGTTA GGCTTCTTGA CCCTATCAAG GAGCTGTTCC 
    CTATTCTGTC ATATGCTGAC TTCTACCAGG TAAATTTTCA ACAATGTACT 
    GAGTTTTTTG ACCTCTAATT GTGAAGCAAG GGATGCATCA AGCTGTAGTA 
    ATTAGGAACT TGAGGTAGAA CCATAGAATC AAGGGTTTTT TGATGCATCA 
    GTGATTATAC CGAGAGGGGA AACATTTGGA AGGGATTTTG TTGGTTGGTA 
    CAGCTAAGTT ATGACTTAAA ATGGGTTCAT CTCACTCGAC AAACGNNGGC 
    TATTGGCCCT CTGGTTTGTC TGCNGTGAAC TAGATTCACA CCTGTTAGAT 
    TGATACTGAA TCTAAAAGCT TACTTTGTAT TTCGCATGGC TTTAAGGGCT 
    TGATTCATCT GTGTTTCTTG GTTACTGAAG CTAGCTGGAG TTGTTGCTG

AT3G09640.1

Model type
Protein coding
Short Description
ascorbate peroxidase 2
Curator Summary
Encodes a cytosolic ascorbate peroxidase APX2. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.
Computational Description
ascorbate peroxidase 2 (APX2); CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 1 (TAIR:AT1G07890.8); Has 8439 Blast hits to 8256 proteins in 1276 species: Archae - 55; Bacteria - 2395; Metazoa - 20; Fungi - 832; Plants - 3373; Viruses - 0; Other Eukaryotes - 1764 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09640.2

Model type
Protein coding
Short Description
ascorbate peroxidase 2
Curator Summary
Encodes a cytosolic ascorbate peroxidase APX2. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.
Computational Description
ascorbate peroxidase 2 (APX2); CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 1 (TAIR:AT1G07890.8); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR