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ET12854

CSHL Arabidopsis genetrap mutant lines

Original: ET12854

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12854

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 173070 [Map]; Strand: w
      • AT2G01390.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: ET12854 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTATCAACAA GGCTACAAAA 
    CATTCAGATA CCAGAATCAT CTACATAAAG CAAAAGTTTT GGATTTTCAG 
    CTAAGCATTT TAACAAACAC TTAGTGTGCA AGAGAATGAA GTTGACCTGT 
    GGCGACAAGA TACTCCATCA ATACAGTATA AGTGTGACAA TTCGGAGAAA 
    CCCGCGACCG TAACATCTCC TTATACACCT CCGTGGCTTC TTCCACCCTC 
    CCATCAGCGA AAAGCATCTT CATGGAAGCA GGGGACCACA CAACGGGAGG 
    GTCGCACCAA TTATCTCTCA TCTCCTCCCA CAAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 173155 [Map]; Strand: w
      • AT2G01390.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET12854 - 5-prime edge 
    TGTTGATGAT GATGTGTTAG TTTCTTCGTT TGATTTTGCA GGAAAACGCG 
    AGGAAGCCTT GGACATATTC TTTAAAATGC AAGAAATTGG TGTGCAGCCA 
    GATAAAGCAG CTTGCAATAT TCTGATAGCG AAAGCCTTGA AATTTGGGGA 
    AACATCTTTC ATGACTCGAG TTCTTGTGTA CATGAAAGAA AATGGAGTTG 
    TCCTACGCTA TCCTATCTTT GTTGAAGCCT TAGAGACACT GAAAGCTGCA 
    GGCGAAAGTG ATGATCTGTT AAGGGAAGTC AACTCGCATA TTTCCGTTGA 
    ATCGTTGTGC TCCAGTGACA TTGATGAGAC TCCAACAGCG GAAGTTGATG 
    ACACTAAGAA TTCAGATGAT AGTAGAGTTA TCAGCTCCGT TCTCTTGATG 
    AAGCAGAATC TGGTTGCAGT TGACATTTTA CTTAACCAGA TGAGAGATAG 
    GAACATAAAG CTGGATTCTT TTGTTGTTTC AGCAATCATA GAAACAAACT 
    GTGACCGTTG TAGAACAGAG GGGGCTTCGT TGGCTTTTGA TTACAGCTTG 
    GAAATGGGAA TTCTCCCCCC

AT2G01390.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G01360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR