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ET12855

CSHL Arabidopsis genetrap mutant lines

Original: ET12855

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12855

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4244968 [Map]; Strand: c
      • AT3G13205.1 - [+] show detail
        Distance: -282; Region: promoter
      • AT3G13210.1 - [+] show detail - crooked neck protein, putative / cell cycle protein, putative
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET12855 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACC 
    CGCAAGGATG CAGAATTGAA GCTTCCACGG ATGACCCAGG TCAAAAACAA 
    GACTCCGGCG CCAATCCAAA TCACCGCCGA GCAGATACTT AGAGAAGCGC 
    GAGAGAGGCA AGAGGCTGAG TTCCGTCCGT CTAATCAGAC AATCACTGAC 
    TCAGCTGAGC TTTCCGACTA CAGACTCCGA CGTCGGAAGG AGTTCGAAGA 
    CCAGATTCGC CGTGCGAGAT TGAACACCCA AGTTTGGGTC AGATATGCGC 
    AGTGGGAAGA GTCGCAGATG GATTTGGAGC GTGCTCGAAG CGTGTGGGAA 
    CGAGCCTTAG AAGGAGAAAA TTACCGGAAC CACACGCTCT GGGTCAAGTA 
    CGCCGATTTT GAGATGAAGA ACAAGTCTGT CAACGAAGCG AGGAACGTTT 
    GGGATCGTGC TGTTTCGCTC CTCCCTCGAG TGGACCAGCT TTGGTACAAG 
    TTTATTCACA TGGAAGAGAA ACTTGGTAAT ATTGCCGGCG CTAGACAGAT 
    ACTCGAGCGT TGGATTCATT GTTCACCTGA TCAACAAGCT TGGCTCTGCT 
    TTATTAAATT CGAACTTAAG TATAATGAAA TCGAATGTGC TAGATCGATA 
    TACGAGAGAT TTGTTC

AT3G13205.1

Model type
Pseudogene
Curator Summary
pseudogene of vacuolar protein sorting-associated protein
Link
InterPro Scan - TAIR

AT3G13210.1

Model type
Protein coding
Short Description
crooked neck protein, putative / cell cycle protein, putative
Computational Description
crooked neck protein, putative / cell cycle protein, putative; FUNCTIONS IN: binding; INVOLVED IN: mRNA processing, RNA processing; LOCATED IN: intracellular, nucleus; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Suppressor of forked (InterPro:IPR008847); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G41770.1); Has 4156 Blast hits to 2031 proteins in 228 species: Archae - 0; Bacteria - 10; Metazoa - 1529; Fungi - 1300; Plants - 749; Viruses - 0; Other Eukaryotes - 568 (source: NCBI BLink).
Link
InterPro Scan - TAIR