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ET12866

CSHL Arabidopsis genetrap mutant lines

Original: ET12866

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12866

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8213814 [Map]; Strand: c
      • AT3G23085.1 - [+] show detail - transposable element gene
        Distance: -2659; Region: intergenic
      • AT3G23090.2 - [+] show detail - TPX2 (targeting protein for Xklp2) protein family
        Distance: 487; Region: intergenic
    Flanking Genome Sequence: ET12866 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTACTTTGGA CAAACCGACA 
    ACAACGAAAT CTTTTTTTTT CTTGTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8213807 [Map]; Strand: c
      • AT3G23085.1 - [+] show detail - transposable element gene
        Distance: -2652; Region: intergenic
      • AT3G23090.2 - [+] show detail - TPX2 (targeting protein for Xklp2) protein family
        Distance: 494; Region: intergenic
    Flanking Genome Sequence: ET12866 - 3-prime edge 
    GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA CTTTGGACAA 
    ACCGACAACA ACGAAATCTT TTTTTTTCTT GTCAACTAAA TCTTTTTCTG 
    TTTCGTATTT TTAAAGTTTG TAAAGTTGGA GCAAGTTGTA ACATATTGAT 
    AATATAATCA AACAACTAAA TGATTAAGGA ATAACCAGTT CATTTGATCC 
    ACCAACTTCT CACCAATAAT GACAGCTTTC ATCAAACAAC CTCCTTTTTG 
    AAAATAAACT ATTGTGATTA GAGCCGTGAC AAAATCTTTG TATAAAATAA 
    GGCAATGGTC TTGACTTTTG GACCCCATCC ATTACGAACA ATATCAGGGA 
    CCCAACATTT ATTCTAATTA GGGATATGAA TAAAGGTTTT GACAGTGTAT 
    TGATTATTCT GAAAAGAATA TGAGTAAAGT TGTTTTTTTG TTCATTTGGT 
    TTCATTTTAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8213720 [Map]; Strand: c
      • AT3G23085.1 - [+] show detail - transposable element gene
        Distance: -2565; Region: intergenic
      • AT3G23090.2 - [+] show detail - TPX2 (targeting protein for Xklp2) protein family
        Distance: 581; Region: intergenic
    Flanking Genome Sequence: ET12866 - 5-prime edge 
    TAGTCGATTT TGTCTCTTAA CAAGGTCGAT TAAAATAGAC GAATTCTTAT 
    GGGGCCAATA GTCAGTTTCT CGGACAATCG AGATTTCGTA ATGGAGTGGG 
    CCTAATATTA ATGGGCCAAA AAGGCCCGTA GAATAATATG TGGCGCAACG 
    TCAGTGGCTT GAGGTTCTAA ACAGATCTCG AAGAATCTAA TCCAATTCCA 
    ACACCAGACA TAAAAATCTT GTACTACTAT CGCAGATTAA AGTCACTGTC 
    CAAATCCACG TGTTTCTCGA GTTCATCTCA CTCGA

AT3G23085.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
hAT-like transposase family (hobo/Ac/Tam3), has a 1.1e-91 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G23090.2

Model type
Protein coding
Short Description
TPX2 (targeting protein for Xklp2) protein family
Computational Description
TPX2 (targeting protein for Xklp2) protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf apex, inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: WVD2-like 1 (TAIR:AT3G04630.3).
Link
InterPro Scan - TAIR