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ET12870

CSHL Arabidopsis genetrap mutant lines

Original: ET12870

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12870

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20379208 [Map]; Strand: c
      • AT3G54990.2 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -2686; Region: intergenic
      • AT3G55000.1 - [+] show detail - tonneau family protein
        Distance: -2300; Region: intergenic
    Flanking Genome Sequence: ET12870 - 3-prime edge
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAATTCTAG 
    TTCCAATAGG TAAAAGAGTA ACCTTTTTTC TTACAATATT AATAACTTGC
    ATTGCACAAT AACGTATTAC CCTATAATTC ACAATGATAA TGTGTTTTGA
    AGTCATCTAC ACACTTCAAA GTTTATTACT CAATCGAAAA TTGAAATATT
    GTCTACCACT CAAATTTCTT GAAATGGTTA AAATACTTGA ACGTGTACTA
    TATGCAAAAA TCTCTGATAT TTAACTGCTT TGAAATTTTT ATCAGAATAT
    TACTAGTGAT GGGCCAATTT CTTTGTTAAC CTTGTGCTTT ATGCACTTAT
    GTTTATAGTC TCTATTTTCT ACACCTAAAC AACACAATCT ATTTGTAGGT
    TGCAACTCGG ACCCAA

AT3G54990.2

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
Encodes a AP2 domain transcription factor that can repress flowering. SMZ and its paralogous gene, SNARCHZAPFEN (SNZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.
Computational Description
SCHLAFMUTZE (SMZ); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT2G39250.1); Has 4786 Blast hits to 4207 proteins in 234 species: Archae - 0; Bacteria - 32; Metazoa - 0; Fungi - 0; Plants - 4687; Viruses - 15; Other Eukaryotes - 52 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G55000.1

Model type
Protein coding
Short Description
tonneau family protein
Curator Summary
Encodes a protein of unknown function that is involved in cortical microtubule organization. Mutants exhibit abnormal cell growth and patterns of division. TON1A can functionally complement TON1B and their roles appear to be redundant in plants. Encodes a novel protein that is similar to human FOP and OFD1 centrosomal proteins. Localizes to the preprophase band, cytoplasm and cell cortex where it is probably associated with the cortical cytoskeleton. TON1A associates with plant centrins CEN1 and CEN2.
Computational Description
TONNEAU 1A (TON1A); INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FGFR1 oncogene partner (FOP), N-terminal dimerisation domain (InterPro:IPR018993), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: tonneau 1b (TON1b) (TAIR:AT3G55005.1); Has 229 Blast hits to 226 proteins in 73 species: Archae - 0; Bacteria - 3; Metazoa - 122; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR