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ET12874

CSHL Arabidopsis genetrap mutant lines

Original: ET12874

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12874

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 152313 [Map]; Strand: c
      • AT1G01400.1 - [+] show detail - unknown protein; Has 21 Blast hits to 21 proteins in 8 species: Archae - 0; B...
        Distance: -103; Region: promoter
      • AT1G01410.1 - [+] show detail - pumilio 22
        Distance: -800; Region: promoter
    Flanking Genome Sequence: ET12874 - 3-prime edge 
    TTCATCCCTA ATGTATTAAT ATTTTCTTTT TCCCCTGAAC GTTTATATGT 
    ATAATTTTAA TAATTACACT TGGATGAAAC CAGAGATGAT AATTAAATAA 
    ATTAAGGAAC TTTTTGAGAA AAAAGTTTTA TTTGGCATAC GTGTGAGAGC 
    CTAATAAACC TGATCCGGTT CAGGGGGAAT GGTTAAATGT TAAGTACACG 
    AGAATTCTAA CCCATTAATG ATTTCGTCTG AGCAGTTTTC ATTTGTCTTT 
    GATCATGGCT CTGTTTTTTA TTTATTTTCT GACTTGGTCT GTAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 152215 [Map]; Strand: c
      • AT1G01400.1 - [+] show detail - unknown protein; Has 21 Blast hits to 21 proteins in 8 species: Archae - 0; B...
        Distance: -5; Region: promoter
      • AT1G01410.1 - [+] show detail - pumilio 22
        Distance: -898; Region: promoter
    Flanking Genome Sequence: ET12874 - 5-prime edge 
    TTTCCGTCCT ACTTTCTCCC TCTATAAATA ACGTACAGAG ACTTGAACTT 
    GTTTTCTTTT CTTGATCAGT TATCGGAATC TTTTATTTCT TCATCTCACT 
    C

AT1G01400.1

Model type
Protein coding
Computational Description
unknown protein; Has 21 Blast hits to 21 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 1; Plants - 13; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01410.1

Model type
Protein coding
Short Description
pumilio 22
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 22 (PUM22); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G64490.1); Has 304 Blast hits to 271 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 65; Plants - 186; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).
Link
InterPro Scan - TAIR