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ET12878

CSHL Arabidopsis genetrap mutant lines

Original: ET12878

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12878

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16286651 [Map]; Strand: w
      • AT4G33980.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G...
        Distance: -1593; Region: intergenic
      • AT4G33985.1 - [+] show detail - Protein of unknown function (DUF1685)
        Distance: 1461; Region: intergenic
    Flanking Genome Sequence: ET12878 - 3-prime edge 
    AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCAC CGTAGGCAAT 
    ATAATTATTT CCAAACTTTG GAAAATCGAT CTATCTTTAG TTTTTTTTCT 
    TTTCTTTTTC ATATAGACTC TGATTCTACT ACAGAACTTG TAAATTTTTA 
    TATTATGATT ATCATTCATA AGAATGTACA ATATTTATAT AGAGTTCAAG 
    AAAGGAGGAT CTCAAAAAGA AAATCTCGAT GGATTTGTAC ATATCTCTAA 
    AGATGGAGTC TATATGATTA TAAAAAGATA ATACATTTCA TCCAACCATT 
    AGCAAAGTGG TCTACATTAG GATATGAAGA AGTGGTCTAC ATTAGAAAAC 
    TATTATTATC CGCGAGATAT TTTGTTTTAG GTTGTAAAAA GAAAAGGGCA 
    GATATTTTCG TTTGTAACGA ACGAAGCGGC AGATATTTTG AAGCAACCAC 
    TGTCCCACGT CAGCAAAATG TCTCTTAGCG CAAATGGATA TTTGCGAAAC 
    CAATGGCTAA TTTTTTAATT AGTTGTTTAT TCGTATTTAT CCTATCAACA 
    TTTTATATTT TAGATAATGA TACTTAATTT CTCTTGGACT AATCTCATTA 
    TCCAAATTCA AATGATATTT AATGAAAGTT AAGTAACTGT TTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16286716 [Map]; Strand: w
      • AT4G33980.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G...
        Distance: -1658; Region: intergenic
      • AT4G33985.1 - [+] show detail - Protein of unknown function (DUF1685)
        Distance: 1396; Region: intergenic
    Flanking Genome Sequence: ET12878 - 5-prime edge 
    CCTACTTTCT CCCTGCTCAC AGTCACCAAC CGCGGATTCT CTCATTTCGG 
    TGAACATGTC AAACATCAAC CAATTAGCAA TAATTAATCA TCTCATGTGG 
    AGCCACTTAA TAAATATCAA TAATCTCATG TGGAGCCAAT TATGTTTTTC 
    TAGATTCTCT ATTTTAGTCT TTAGGTATAA CATATATGTG TACATGTCCA 
    TCGAGATCAT TCTCCTTAAA GTCTTCCTAT CTCCTTAAAG TCTTCCTATG 
    TACATTGTTA CGAATAATAT ACAACTCTAT AAGCTCTTGA TAGCTATTAC 
    AACATACGAC ATTATTGTTA TAATACAGCC ATATTGATAT AATTTTTTTT 
    ATTTTTTTTG TAATCCTATG GGGCTATGTG CCTATGCCTA AATCCTAATG 
    CATA

AT4G33980.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G42900.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G33985.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1685)
Computational Description
Protein of unknown function (DUF1685); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT2G15590.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR