1. Home
  2. Mutant Lines
  3. ET12880

ET12880

CSHL Arabidopsis genetrap mutant lines

Original: ET12880

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12880

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5073720 [Map]; Strand: c
      • AT3G15070.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -403; Region: promoter
      • AT3G15070.2 - [+] show detail - RING/U-box superfamily protein
        Distance: -364; Region: promoter
      • AT3G15080.1 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
        Distance: -496; Region: promoter
    Flanking Genome Sequence: ET12880 - 3-prime edge 
    GAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TACTAACTAA 
    CAATCTTTTT AAAAAAAATT AGACCTCTGG AATTTTCACT ATCATAGGAC 
    GATTAAAAAA AAAGTTAGGC AAAATGTTGA GAAACAGAAA AATTAGGCAA 
    AACTTAGAAC TAAAACAATA GATCAATGCG ACGGAACAGA ATTGAATTAT 
    CCCATGAGGC AAGTAACATA TGATGCGAAT ATTTATAGGG AGGTGATTCC 
    CAATCCCATG TGCTTCTTTT TGGTTAAACC ACCTTCTCAC CTAATCTAAT 
    TGTGCCCAAT TAATCAACCA AGTCTCTCTG TTTATGTTAA GAAAGAACAT 
    TATAAAAATA CAACCATATC TTTTTTTTTC CTCCAAAA

AT3G15070.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G53190.2); Has 7358 Blast hits to 7345 proteins in 274 species: Archae - 0; Bacteria - 4; Metazoa - 2154; Fungi - 590; Plants - 3295; Viruses - 49; Other Eukaryotes - 1266 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G15070.2

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G53190.2).
Link
InterPro Scan - TAIR

AT3G15080.1

Model type
Protein coding
Short Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 1777 Blast hits to 1777 proteins in 250 species: Archae - 0; Bacteria - 24; Metazoa - 732; Fungi - 619; Plants - 217; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).
Link
InterPro Scan - TAIR