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ET12881

CSHL Arabidopsis genetrap mutant lines

Original: ET12881

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12881

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1868377 [Map]; Strand: w
      • AT1G06150.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon12 (CDS)
    Flanking Genome Sequence: ET12881 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAGTTTCCA TGTTAAAATT 
    CAGACGACTC TTATTGATTT TTATTCAGCC ACTGGTAGAA TCAGGGAAGC 
    CAGGAAAGTG TTTGATGAAA TGCCTGAAAG AGATGATATT GCTTGGACCA 
    CAATGGTTTC TGCTTATCGT CGGGTTTTGG ATATGGACTC TGCGAATTCT 
    TTAGCTAACC AAATGTCGGA GAAGAATGAG GCTACGTCGA ACTGTTTGAT 
    TAATGGATAT ATGGGATTAG GCAATCTGGA ACAAGCAGAG TCATTGTTTA 
    ATCAGATGCC TGTGAAGGAC ATAATCTCAT GGACCACTAT GATCAAGGGT 
    TACTCGCAAA ATAAAAGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1868472 [Map]; Strand: w
      • AT1G06150.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon12 (CDS)
    Flanking Genome Sequence: ET12881 - 5-prime edge 
    TCCAAATTTC CAGATGTGCG CCTGGAGTGA TTCCCCAAAC CTAGAAGCGA 
    AAGAAGACGC CTTTACTAGT GAAGAGTACG TGTAGCTTGA TGGAGAAACC 
    GAGTCCCTGA GCATACGAAC ATACAATTCC AGAGATCGAA TCGGGTGAGA 
    ACAAGTAACG AAGCCTTTAA ACAACGCGTT GTAGACGAAA ACATTAGGTT 
    CCTGCATCTG GGTCATGGTG GAAACTGCGA GGTCAAGACG TTTAAAGGAA 
    GTGCA

AT1G06150.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
EMBRYO DEFECTIVE 1444 (EMB1444); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 7 (TAIR:AT2G31280.1); Has 563 Blast hits to 411 proteins in 68 species: Archae - 0; Bacteria - 54; Metazoa - 32; Fungi - 13; Plants - 398; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Link
InterPro Scan - TAIR