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ET12883

CSHL Arabidopsis genetrap mutant lines

Original: ET12883

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12883

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18392269 [Map]; Strand: w
      • AT2G44560.1 - [+] show detail - glycosyl hydrolase 9B11
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: ET12883 - 5-prime edge 
    CCTACTTTCT CCCTGGACCA AGTATATAGT CTACCTATAT AACATGTTGT 
    AGAAATCACA CATTAATATT GTATGAACAT CAGAACATGT CTTATGGTAT 
    GTACTATATT AGGGTTAGTT AACTACCTGG GAACGAGCGA GGTCGAGAAG 
    ATCAGAAGCT TGAAGAGCAC CATTGGGACA TTGGATGGAG GCTTTTGCGT 
    CTGTAAGATA TTTAGAATAT GCTGAGAGGA CGAAAGTAGC GGCTGTGGTG 
    TATTGGAGGT TGTTCCACGG CAAGAAGTAG AGCAAACCGC CAGGGGTTTT 
    CTTAACGTTG TTGGAACCTT TTTGAGCACA GTTGCAGATA AACTGCTCTG 
    CCATACTCTT GTACTCTGCG ATCTTTCCAT TGCTCTCTAC TTTCCCTTCA 
    AGTGCAAGCT GCATTTGCAA AAACTTTGTG TTATATATGT TTATTT

AT2G44560.1

Model type
Protein coding
Short Description
glycosyl hydrolase 9B11
Computational Description
glycosyl hydrolase 9B11 (GH9B11); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B9 (TAIR:AT2G44540.1); Has 1847 Blast hits to 1833 proteins in 271 species: Archae - 2; Bacteria - 688; Metazoa - 179; Fungi - 19; Plants - 915; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Link
InterPro Scan - TAIR