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ET12890

CSHL Arabidopsis genetrap mutant lines

Original: ET12890

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12890

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10421705 [Map]; Strand: c
      • AT4G19030.1 - [+] show detail - NOD26-like major intrinsic protein 1
        Distance: 0; Region: exon5 (3UTR)
    Flanking Genome Sequence: ET12890 - 3-prime edge
    GGGTAGAGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAATCAAC 
    TCCACCCATG TTTTCTTCTC TCTCAACAAG TGCTACCGAT TCTCACGGTC
    TTTAGAAATG AACCACTTTT AGTGATTTCT CGCAATGGTT TATCGGTATA
    TCTAACCGTG TTATAAACCC ATGCACCCGC TATCGCACCA AGAGTTGGTG
    CAACTAGGTA GATCCAAATT CCTTTGTAGC AACCATATAC CAGTGCAGGT
    CCTAAACTTC TTCCTGGATT CATCTCCCTC CTCGATACCG GTCTAATAAA
    AATGATGAAC ATAACCGTAT ATCAGTTTTT GGAATTCTTA CTCTAAAAGG
    AAAAGTATAA GCACAATAAT AGAAATGGTA ACTGATAACT TACGCGGCAA
    TTAGCACGTT AAGTAGCACC GTTGATCCTA TTGCTAATCC AGCAAGTTCT
    CCGATCTGAA TATTGCAGCA TTTGGTCCCA ATGTTAAGTT TCTCATAAAT
    TTAAAGACCA AAGAAAACAA ATGTAACTTT CTGAGAGGGA

AT4G19030.1

Model type
Protein coding
Short Description
NOD26-like major intrinsic protein 1
Curator Summary
an aquaporin whose expression level is reduced by ABA, NaCl, dark, and dessication. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance.
Computational Description
NOD26-like major intrinsic protein 1 (NLM1); CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NOD26-like intrinsic protein 1;2 (TAIR:AT4G18910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR