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ET12894

CSHL Arabidopsis genetrap mutant lines

Original: ET12894

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12894

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5954066 [Map]; Strand: w
      • AT3G17390.1 - [+] show detail - S-adenosylmethionine synthetase family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G17400.1 - [+] show detail - F-box family protein
        Distance: -821; Region: promoter
    Flanking Genome Sequence: ET12894 - 5-prime edge 
    TCCTACTTTC TCCCTGGTTG GAGTAAGATC GTAATTTCGT CCAGATTCAT 
    TCCCAGTTTC ATCTAACTGT GTTCAGACAA TGAGATCTAG ATATCTGACG 
    GTTCAGATTA GATCTAGAAA TGTAAGAAGG TTTTAAACCG TTGGATTTGC 
    TTCACTGGAC CACCGCGTGC GAGTACAACT T

AT3G17390.1

Model type
Protein coding
Short Description
S-adenosylmethionine synthetase family protein
Curator Summary
S-adenosylmethionine synthetase
Computational Description
METHIONINE OVER-ACCUMULATOR 3 (MTO3); FUNCTIONS IN: methionine adenosyltransferase activity; INVOLVED IN: lignin biosynthetic process, response to cold, methionine metabolic process, S-adenosylmethionine biosynthetic process; LOCATED IN: nucleolus, cell wall, plasma membrane, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133), S-adenosylmethionine synthetase superfamily (InterPro:IPR022636), S-adenosylmethionine synthetase, N-terminal (InterPro:IPR022628), S-adenosylmethionine synthetase, C-terminal (InterPro:IPR022630), S-adenosylmethionine synthetase, conserved site (InterPro:IPR022631), S-adenosylmethionine synthetase, central domain (InterPro:IPR022629); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine synthetase 1 (TAIR:AT1G02500.2); Has 10856 Blast hits to 10849 proteins in 2868 species: Archae - 12; Bacteria - 5440; Metazoa - 373; Fungi - 167; Plants - 707; Viruses - 1; Other Eukaryotes - 4156 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G17400.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G17620.1); Has 879 Blast hits to 873 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 877; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR