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ET12895

CSHL Arabidopsis genetrap mutant lines

Original: ET12895

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12895

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1068771 [Map]; Strand: w
      • AT4G02425.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (5UTR)
      • AT4G02430.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -203; Region: promoter
      • AT4G02430.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -203; Region: promoter
    Flanking Genome Sequence: ET12895 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTACTAC TCGATATTCT 
    CAAAGAACTT GAAAACAACA CAGATCCATT CCCAATTTCA GATTCACTCA 
    AAAGGATTTT TCTTTTTTCA TTTTCGCTTT TTGTGATCTG GAAAGTTGTT 
    ACCTTTAACA ATGTCTCCGA AACATCTAGA GTCATCACGA AGCTCTATTG 
    AATCATGCAC TTCACAGCTT CTCTCATGGC GACCATTTCA CCGCTCCAAA 
    ACCCTAGACT CATCTGACCA ACCACCGCAG ACCAATGGGT TTCACTCCTT 
    TACTACCAAA CGCCCTTGCT TCTCCGATCG ATCCACTTCT TTCACCATCG 
    AAGCTATTGA GCCGTCTCCC GCTCGCAGAC GACGACCATG GAGGGAAGAC 
    ATTATCAGCT TCCAATTACA

AT4G02425.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 29 Blast hits to 28 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02430.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.3); Has 29 Blast hits to 28 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02430.2

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.2); Has 29 Blast hits to 28 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR