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ET12905

CSHL Arabidopsis genetrap mutant lines

Original: ET12905

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET12905

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26297734 [Map]; Strand: w
      • AT1G69850.1 - [+] show detail - nitrate transporter 1:2
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: ET12905 - 5-prime edge 
    ATTTTCAAGA CAATCTTCAC ATCTTCCACT TGTTGGACTG TGCATTCTAA 
    CAATCTATGG ACAGGTTTTT CATCCGCAGC TCCATTTAAT ACTTTCAAAC 
    TGTTAGTTAG TTGTGCCCGA GGAGGCAAAG CTTCTTCTTG ACGGTGGCTT 
    TTCCAATTCT CCTTGTGATT CAACTTCTTT TTTCCCCTTT GATACGCAAT 
    GATTTGAGGG ACTCACGGAC ATACTCGCAA CCGCATTGCT TGAACTTCCA 
    CTCGAGCAGC ACTTAACCGA AGCCGCAAGA AGAACCCTGA TAAAGAAATT 
    CATATACATA ACTTAGGGGA CACGGCAATC

AT1G69850.1

Model type
Protein coding
Short Description
nitrate transporter 1:2
Curator Summary
Encodes an inducible component of low-affinity nitrate uptake. mRNA found primarily in root hairs and the epidermis of roots.
Computational Description
nitrate transporter 1:2 (NRT1:2); FUNCTIONS IN: transporter activity, calcium ion binding; INVOLVED IN: response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G27040.1); Has 5870 Blast hits to 5639 proteins in 1033 species: Archae - 0; Bacteria - 2327; Metazoa - 503; Fungi - 400; Plants - 2186; Viruses - 0; Other Eukaryotes - 454 (source: NCBI BLink).
Link
InterPro Scan - TAIR