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ET12919

CSHL Arabidopsis genetrap mutant lines

Original: ET12919

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12919

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23410819 [Map]; Strand: c
      • AT3G63380.1 - [+] show detail - ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase famil...
        Distance: -459; Region: promoter
    Flanking Genome Sequence: ET12919 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAGGTATAA TATCTATCAA 
    GTGAAATTTA TACTACTCAA ACTCAAAATC CGTCTACTTT TCCACAAATC 
    TATGTTTACA AATAATAAAA TGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 187756 [Map]; Strand: c
      • AT4G00430.1 - [+] show detail - plasma membrane intrinsic protein 1;4
        Distance: -129; Region: promoter
      • AT4G00430.2 - [+] show detail - plasma membrane intrinsic protein 1;4
        Distance: -129; Region: promoter
    Flanking Genome Sequence: ET12919 - 5-prime edge 
    TCCTACTTTC TCCCTGCTCT CAGTTTATTT GCCTAAGCCT TGAAATTAGG 
    TGTTAACTAT TCGTTATACA AGTTGAAACT TGAAATAAAG AAAAAACTAT 
    AAGTTATACT ATTTTATTTT CTTAGCAATA ACTAAAAATA AATGTTTGGA 
    AACGTTAGGC AATTTTATTA TATTCTATCG TTGTTCTCTA TAAATGAAGT 
    CTCGACCACA CACTAGGTAG CTACACACGA GAAAGAAAAA GCTCACAACT 
    TTAACCTTTC TGGAGAGAGA AGAACAAAAG AGGGAGAGGG AGAGAAATGG 
    AAGGCAAAGA AGAAGATGTA CGAGTGGGAG CTAACAAGTT CCCGGAGAGG 
    CAACCCATCG GTACATCGGC TCAGTCCACC GACAAGGACT ACAAAGAGCC 
    ACCTCCTGCG CCACTGTTCG AGCCCGGCGA GCTCAGCTCA TGGTCTTTCT 
    ACAGAGCCGG AATAGCTGAG TTTATCGCTA CTTTCTTGTT TCTCTACATC 
    ACTGTTTT

AT3G63380.1

Model type
Protein coding
Short Description
ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein
Computational Description
ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: calcium-transporting ATPase activity, calmodulin binding; INVOLVED IN: calcium ion transport, cation transport, metabolic process, ATP biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (TAIR:AT3G22910.1); Has 46574 Blast hits to 34715 proteins in 3214 species: Archae - 909; Bacteria - 32032; Metazoa - 4086; Fungi - 2666; Plants - 2162; Viruses - 3; Other Eukaryotes - 4716 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00430.1

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 1;4
Curator Summary
a member of the plasma membrane intrinsic protein subfamily PIP1.
Computational Description
plasma membrane intrinsic protein 1;4 (PIP1;4); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1B (TAIR:AT2G45960.1); Has 10702 Blast hits to 10683 proteins in 2216 species: Archae - 88; Bacteria - 5147; Metazoa - 1472; Fungi - 442; Plants - 2512; Viruses - 2; Other Eukaryotes - 1039 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00430.2

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 1;4
Curator Summary
a member of the plasma membrane intrinsic protein subfamily PIP1.
Computational Description
TRANSMEMBRANE PROTEIN C (TMP-C); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1B (TAIR:AT2G45960.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR