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ET12926

CSHL Arabidopsis genetrap mutant lines

Original: ET12926

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12926

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14158632 [Map]; Strand: c
      • AT4G28680.3 - [+] show detail - L-tyrosine decarboxylase
        Distance: 0; Region: exon12 (3UTR)
      • AT4G28680.4 - [+] show detail - L-tyrosine decarboxylase
        Distance: 0; Region: exon13 (3UTR)
      • AT4G28680.1 - [+] show detail - L-tyrosine decarboxylase
        Distance: 0; Region: exon12 (3UTR)
      • AT4G28680.2 - [+] show detail - L-tyrosine decarboxylase
        Distance: 0; Region: exon12 (3UTR)
      • AT4G28690.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: RPM1 interacting protein 13 (TAIR...
        Distance: -318; Region: promoter
    Flanking Genome Sequence: ET12926 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAAAAGTCT GGAGGGGGAC 
    ATTGTTATGC TATTAGGAAT AAACTTATCA AATCCTCTTT TATTGTAACT 
    TCCTCAAAGT TGAAAGTAAT AAAATTTGTT TTTACTATTC ATGTGTCCAC 
    AATCATTCGA TTTTACTGTA TCTTTTTTTT TT

AT4G28680.1

Model type
Protein coding
Short Description
L-tyrosine decarboxylase
Curator Summary
Encodes a stress-induced tyrosine decarboxylase (TyrDC). Recombinant (His)6-TyrDC expressed in E. coli catalyzes the conversion of L-tyrosine to tyramine. Recombinant TyrDC forms tetramers.
Computational Description
L-tyrosine decarboxylase (TYRDC); CONTAINS InterPro DOMAIN/s: Aromatic-L-amino-acid decarboxylase (InterPro:IPR010977), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT2G20340.1); Has 8292 Blast hits to 6272 proteins in 1930 species: Archae - 160; Bacteria - 2569; Metazoa - 2508; Fungi - 762; Plants - 340; Viruses - 8; Other Eukaryotes - 1945 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G28680.2

Model type
Protein coding
Short Description
L-tyrosine decarboxylase
Curator Summary
Encodes a stress-induced tyrosine decarboxylase (TyrDC). Recombinant (His)6-TyrDC expressed in E. coli catalyzes the conversion of L-tyrosine to tyramine. Recombinant TyrDC forms tetramers.
Computational Description
L-tyrosine decarboxylase (TYRDC); CONTAINS InterPro DOMAIN/s: Aromatic-L-amino-acid decarboxylase (InterPro:IPR010977), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT2G20340.1); Has 8315 Blast hits to 6320 proteins in 1946 species: Archae - 163; Bacteria - 2600; Metazoa - 2483; Fungi - 771; Plants - 335; Viruses - 8; Other Eukaryotes - 1955 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G28680.3

Model type
Protein coding
Short Description
L-tyrosine decarboxylase
Curator Summary
Encodes a stress-induced tyrosine decarboxylase (TyrDC). Recombinant (His)6-TyrDC expressed in E. coli catalyzes the conversion of L-tyrosine to tyramine. Recombinant TyrDC forms tetramers.
Computational Description
L-tyrosine decarboxylase (TYRDC); CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aromatic-L-amino-acid decarboxylase (InterPro:IPR010977), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT2G20340.1).
Link
InterPro Scan - TAIR

AT4G28680.4

Model type
Protein coding
Short Description
L-tyrosine decarboxylase
Curator Summary
Encodes a stress-induced tyrosine decarboxylase (TyrDC). Recombinant (His)6-TyrDC expressed in E. coli catalyzes the conversion of L-tyrosine to tyramine. Recombinant TyrDC forms tetramers.
Computational Description
L-tyrosine decarboxylase (TYRDC); CONTAINS InterPro DOMAIN/s: Aromatic-L-amino-acid decarboxylase (InterPro:IPR010977), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT2G20340.1).
Link
InterPro Scan - TAIR

AT4G28690.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: RPM1 interacting protein 13 (TAIR:AT2G20310.1); Has 455 Blast hits to 438 proteins in 127 species: Archae - 0; Bacteria - 18; Metazoa - 148; Fungi - 91; Plants - 136; Viruses - 3; Other Eukaryotes - 59 (source: NCBI BLink).
Link
InterPro Scan - TAIR