1. Home
  2. Mutant Lines
  3. ET12928

ET12928

CSHL Arabidopsis genetrap mutant lines

Original: ET12928

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12928

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10399920 [Map]; Strand: c
      • AT2G24490.2 - [+] show detail - replicon protein A2
        Distance: 0; Region: exon3 (CDS)
      • AT2G24490.1 - [+] show detail - replicon protein A2
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: ET12928 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACTTCTGT 
    GACTTTAGAT TCATCTTTGT CACACACTAA TCCAACAAGT GAAACCTGAA 
    TTATACCAAA AACATCACAC AATTGAGTAA AAGTTTGACC ATATTGACGA 
    ATAACGGTAA TAAACAAAGA GATCTAGAAA TGGTATTTAC GTTTGTTAGT 
    GAGATTCCAT TGATGACGAG ACCAGATTTT TCACCACTGG ATTGGAAACA 
    TTCGGTGATT TGCTTCACCG TCACTGGAAC AAGACCTTGA AAATCACGAT 
    TCTGCATATT CCCACAAAAC ATATACAGAG CAGATTTAGC AATTCCAAAA 
    TCGATTGTTA CAGAGAAACG TTTAGCGATT CGGAAACTTT CGATCTGTAG 
    CCTAATCGGT GGAATTGAAC GAAATGGAAG ATGGATTATA TTACCTTAGC 
    GGTGGAGGAG GAGGATTCGT AGGCTTGAGA AGGTTGAGAA GACATGAATC 
    CGCCGCCGGA GAAGCCGGAA TTAGGCTCGA ATTGGCTGCT GGAGAACATT 
    TTCGAAGCTA CGAAATCGGA NAATCGAAAG TAACTGTGAA GAGATTTAGG 
    AAGTTGAAAA GTGATCAAAG TAAAGGGAAG AGAAGATTTT GGGGGAATTT 
    TAATAGCGAT GAAAGAATTT TTGGGGGATT TTCCCTCCAA TTTTGATTAG 
    AGCTTCCCGC CAATTAGGGC GAGGTAAATC TATAATATAA TTACTTTTTA 
    ATAAATTCAG TTCTCCGGTT TACTCT

AT2G24490.1

Model type
Protein coding
Short Description
replicon protein A2
Curator Summary
Encodes a component of Replication Protein A. Component of transcriptional gene silencing which does not affect endogenous small RNA accumulation nor DNA methylation. Localized in the nucleus. Involved in DNA repair. Interacts physically with ROS1.
Computational Description
replicon protein A2 (RPA2); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Replication protein A, subunit RPA32 (InterPro:IPR014646), Replication protein A, C-terminal (InterPro:IPR014892), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365); BEST Arabidopsis thaliana protein match is: Replication protein A, subunit RPA32 (TAIR:AT3G02920.1); Has 524 Blast hits to 524 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 127; Plants - 108; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G24490.2

Model type
Protein coding
Short Description
replicon protein A2
Curator Summary
Encodes a component of Replication Protein A. Component of transcriptional gene silencing which does not affect endogenous small RNA accumulation nor DNA methylation. Localized in the nucleus. Involved in DNA repair. Interacts physically with ROS1.
Computational Description
replicon protein A2 (RPA2); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Replication protein A, subunit RPA32 (InterPro:IPR014646), Replication protein A, C-terminal (InterPro:IPR014892), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365); BEST Arabidopsis thaliana protein match is: Replication protein A, subunit RPA32 (TAIR:AT3G02920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR