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Mutant Lines
ET12929

ET12929

CSHL Arabidopsis genetrap mutant lines

Original: ET12929

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12929

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 220836 [Map]; Strand: w
  - AT4G00480.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: -1093; Region: intergenic
  - AT4G00490.1 - [+] show detail - beta-amylase 2
    Distance: -1484; Region: intergenic
Flanking Genome Sequence: ET12929 - 5-prime edge
```
TCCTACTTTC TCTCTGTCGA CGAGCATTTC ACCCGAATAA TTCCATGATA 
CTCTAATAGA TTATATATTA AACAAATACA CACTAC
```

5 prime edge [+] show sequence

Chromosome: 4; Position: 220862 [Map]; Strand: w
- AT4G00480.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
  Distance: -1119; Region: intergenic
- AT4G00490.1 - [+] show detail - beta-amylase 2
  Distance: -1458; Region: intergenic

TTTCACCCGA ATAATTCCAT GATACTCTAA TAGATTATAT ATTAAACAAA 
TACACACTAC TGTTCAAGTT TGATAATCAA TCGCGAGACA TCGCATATAC 
CGATCGTTAT TTGTTTACCA TCAAAGCACT ATTTTGTCCG AAGTAAGTAA 
ATATAGCAAG TGGCAGTAAA AAAATAGTAA TAAAATTGAA GGCAAGATCA 
GGAGAGAGCT GGCTGAAATG AAGGCAAGAA ACTCGTGAAA ATAATAATTG 
ATCCATCTCT ATCCACGAAG CCCTACATAA TTTAGTAACG CACCACTTGT 
GGTTGCATGC ACATTTATTT CCATAACGAC AAAACTTTGT GTTTAATTTT 
ATAAATTATT TCTGTTGGCA CAACACACTC ATTATAGCCA TATGTTTGTG 
TTTATATTTT CTATTTTCAT AGAAACAATT AATTTAATTT TAGATGCCCT 
AGACATTTTT TAAATGTATA TAATAATAAA ATTATAGTAT AAAAGTCTAT 
ATATTACCCT AAATTTTACA AAACATATAC AATCCTAACC AATGGGATCC 
TATATCAAAT TGCATTCCGG ATGAAAAAGA AGCGACTTGA ACCCCGACAA

AT4G00480.1

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator Summary: MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminus
Computational Description: ATMYC1; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G63650.3); Has 1473 Blast hits to 1082 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1458; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00490.1

Model type: Protein coding
Short Description: beta-amylase 2
Curator Summary: Encodes a chloroplast beta-amylase. The enzyme activity is very weak compared to BAM1 and BAM3. Mutant of BAM2 has no visible phenotype.
Computational Description: beta-amylase 2 (BAM2); FUNCTIONS IN: beta-amylase activity; INVOLVED IN: carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-amylase 7 (TAIR:AT2G45880.1); Has 836 Blast hits to 835 proteins in 165 species: Archae - 0; Bacteria - 84; Metazoa - 0; Fungi - 0; Plants - 686; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Link: InterPro Scan - TAIR