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ET12933

CSHL Arabidopsis genetrap mutant lines

Original: ET12933

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12933

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30034076 [Map]; Strand: w
      • AT1G79830.3 - [+] show detail - golgin candidate 5
        Distance: -175; Region: promoter
      • AT1G79830.4 - [+] show detail - golgin candidate 5
        Distance: -175; Region: promoter
      • AT1G79830.1 - [+] show detail - golgin candidate 5
        Distance: -282; Region: promoter
      • AT1G79830.2 - [+] show detail - golgin candidate 5
        Distance: -282; Region: promoter
    Flanking Genome Sequence: ET12933 - 3-prime edge
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TGCATAGGTT 
    AGCGTCTTAG CGAGCGTGCG GAACCGAGGG TGCCTTGGTT TGCTGGCCCC
    AAAATGGGTG

AT1G79830.1

Model type
Protein coding
Short Description
golgin candidate 5
Curator Summary
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).
Computational Description
golgin candidate 5 (GC5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TATA element modulatory factor 1 DNA binding (InterPro:IPR022092), TATA element modulatory factor 1 TATA binding (InterPro:IPR022091); Has 167116 Blast hits to 92088 proteins in 3687 species: Archae - 2004; Bacteria - 38214; Metazoa - 68462; Fungi - 14168; Plants - 9575; Viruses - 617; Other Eukaryotes - 34076 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79830.2

Model type
Protein coding
Short Description
golgin candidate 5
Curator Summary
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).
Computational Description
golgin candidate 5 (GC5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TATA element modulatory factor 1 DNA binding (InterPro:IPR022092), TATA element modulatory factor 1 TATA binding (InterPro:IPR022091); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79830.3

Model type
Protein coding
Short Description
golgin candidate 5
Curator Summary
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).
Computational Description
golgin candidate 5 (GC5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TATA element modulatory factor 1 DNA binding (InterPro:IPR022092), TATA element modulatory factor 1 TATA binding (InterPro:IPR022091).
Link
InterPro Scan - TAIR

AT1G79830.4

Model type
Protein coding
Short Description
golgin candidate 5
Curator Summary
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).
Computational Description
golgin candidate 5 (GC5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TATA element modulatory factor 1 DNA binding (InterPro:IPR022092), TATA element modulatory factor 1 TATA binding (InterPro:IPR022091).
Link
InterPro Scan - TAIR