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Mutant Lines
ET12934

ET12934

CSHL Arabidopsis genetrap mutant lines

Original: ET12934

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12934

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 19644794 [Map]; Strand: w
  - AT3G52980.1 - [+] show detail - Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containi...
    Distance: -866; Region: promoter
Flanking Genome Sequence: ET12934 - 3-prime edge
```
TAGAGGTATT TTACCGACCG TTACCGATTC GTGATCATCG GCGAATTTGA 
GATCTCTCTG ACTTGGTATC TCTTTTGATT TCTATTTAAC ATTTTTATAA 
GTTTTTTTTC TTTCTGAATT TCATTCTATC TTTACCTTTC ATCTCACTCG 
A
```

5 prime edge [+] show sequence

Chromosome: 3; Position: 19528127 [Map]; Strand: c
- AT3G52680.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
  Distance: 0; Region: exon2 (CDS)
- AT3G52680.2 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
  Distance: 0; Region: exon2 (CDS)

ACCTTCAAGG GTGATAAATT CAATAACAGA CGTGTGACTG AAGTGAACGA 
TCCAAGAAAC TTCTCAATGG TTATAGATGT AACTTCAGCG ATATTTGCCT 
CAACCAAATC CGGTGCATTC AGACAAAACT CAGGACATCT TAACTCTTCA 
ATTAGTAAGT ACTTCAAAAA AGGAGCATTT ATCACATACC CCAAAAACTC 
TGGTCCATCA TTGTTATCAT GAATCGTTAA CCTCTGCAAA GAAGGGACCT 
CAATAGTGAA AACCTTAATA TCAGAATCGT CACCTCGATA CAAACGCAAT 
TCCTCAAGAC CAGGACAGCC AGATAAAAGA TTACGGACAG ATGATTCGTC 
TTTGTATCTC ACAAACTCAA GGTGCAGAGT TCTAAGAGAC TTCATAAGAA 
CTGGAGAAGG TATATCTACA AGAATACATA GTACGAGTTT CAACGTCTCA 
AGTGTGTTAC AAGTACACAA GCTACTCGGA AATGTGAAGG TCACACCCCT 
CCCGAGCTCA GCAGGATAAA AATCGAGCAC CAATTCACGT AGATGTCGAG 
AAAAAGCAAT TCCAACCCAA AGTCCAATAT CTACAGGATT AAAGTTAACA 
AATTTG

AT3G52680.1

Model type: Protein coding
Short Description: F-box/RNI-like/FBD-like domains-containing protein
Computational Description: F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT4G00160.1); Has 2324 Blast hits to 2282 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2322; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G52680.2

Model type: Protein coding
Short Description: F-box/RNI-like/FBD-like domains-containing protein
Computational Description: F-box/RNI-like/FBD-like domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT4G00160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G52980.1

Model type: Protein coding
Short Description: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
Computational Description: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504); BEST Arabidopsis thaliana protein match is: CCCH-type zinc fingerfamily protein with RNA-binding domain (TAIR:AT2G05160.1); Has 228 Blast hits to 174 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 226; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link: InterPro Scan - TAIR