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ET12941

CSHL Arabidopsis genetrap mutant lines

Original: ET12941

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12941

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18572102 [Map]; Strand: w
      • AT4G40060.1 - [+] show detail - homeobox protein 16
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: ET12941 - 3-prime edge 
    CGGTAGAGGT TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGCTAAG 
    GTAAACGGTG AAGAAGATAA CAACAACAAC AAAGCTATTA CGGAGGGTGT 
    TAAGGAAGAG GAAGTTCACA AGACGGATTC GATTCCTTCG TCTCCTCTGC 
    AGTTTCTAGA ACATTCCTCT GGTTTTAACT ACCGGCGAAG CTTCACTGAC 
    CTCCGTGACC TTCTACCGAA TTCCACCGTT GTCGAGGCTG GATCTTCCGA 
    TAGTTGCGAT TCAAGCGCCG TTCTTAACGA CGAAACAAGT TCTGATAACG 
    GAAGATTGAC GCCGCCTGTG ACGGTTACTG GCGGGAGTTT CTTACAGTTT 
    GTGAAAACAG AGCAAACAGA GGATCACGAG GATTTTCTAA GCGGTGAAGA 
    AGCTTGTGGT TTCTTCTCCG ATGAACAGCC GCCGTCACTT CATTGGTACT 
    CT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18572159 [Map]; Strand: w
      • AT4G40060.1 - [+] show detail - homeobox protein 16
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: ET12941 - 5-prime edge 
    CCTACTTTCT CCCTGACCTT AGCTTTGATT TTACTAATCT GCAACCAAAA 
    ACTTTAAAAA TCAAACCTTT TTGCATTTTC GTCTCTGAAG TTTCAATTTT 
    TATGGTTTAA AGTCTCTAAT ATTGTACCTC TTGGAGAAGG GAATCATTGT 
    CACGGCGGAG AGAATCGAAA TTGTGGCGGA GAGAATCGTA TTGACCCTTA 
    AGAACACCGT AATCTTTTTC AAGCTGTTTT GTTTTCCACC GTGCACGACG 
    GTTCTGAAAC CAAACAGCTA CTTGACGAGG TTGAAGTCCA AGCTCTTGTG 
    CTAATTTAGT TTTCCTCTCA GGTTCGAGTT TATTCTCAAG TTCGAAATTC 
    TTCTCAAGAG CTTTGACTTG GTCAACTTTT AATCTTCTCT

AT4G40060.1

Model type
Protein coding
Short Description
homeobox protein 16
Curator Summary
Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
Computational Description
homeobox protein 16 (HB16); FUNCTIONS IN: sequence-specific DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 6 (TAIR:AT2G22430.1); Has 9713 Blast hits to 9689 proteins in 534 species: Archae - 2; Bacteria - 4; Metazoa - 7673; Fungi - 210; Plants - 1646; Viruses - 5; Other Eukaryotes - 173 (source: NCBI BLink).
Link
InterPro Scan - TAIR