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ET12943

CSHL Arabidopsis genetrap mutant lines

Original: ET12943

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET12943

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5297881 [Map]; Strand: c
      • AT1G15400.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -999; Region: promoter
      • AT1G15400.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -979; Region: promoter
      • AT1G15405.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT1G15410.1 - [+] show detail - aspartate-glutamate racemase family
        Distance: -443; Region: promoter
    Flanking Genome Sequence: ET12943 - 3-prime edge 
    TCCCTACTCA GGCCCATCCA TAAATACAAT TGTCAAAAAG AAAATAAAAA 
    ATTGGTGGTC CAGCTGGGAA CGAGCCAGCA GGCCATGGTG AATCTGAGTG 
    GCGTCGAGCT GTGATCCGTC CACTGCTGAG AGCGGGAGGT GATCGCTGCT 
    CTGTGAAACC AGCCTCACGC ATTGCCCTCC ACTGCAAGAA CCGCCTGAGC 
    CAAGCCTTCG CTTAACACAC ACGGATCACT CACAGCTTGG ACTGGGCAGC 
    CCGGAACAAT GCCACAACAG ATCCGACCCG TGGGCCGAGC CAGTGTTCCA 
    CCAACTTATT GTCCCCACAC GGGTCACAAG CCCACGTTAC TGAGCTCGAC 
    GTACAAGTAT TGATTTAATT TCATATATAA AGTAAAACAT TTTGAGGTAT 
    GTAACCGATG TGGGACAAAA TACAAGTTTG GGCTTCCCAG ATCCCACATT 
    TGGTGAAACA CATATATAAA GAGTCTCTCC GTTGATTAGC TTCCCAGATC 
    CCACATTTCA GGTAAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5297787 [Map]; Strand: c
      • AT1G15400.3 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -963; Region: promoter
      • AT1G15400.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -905; Region: promoter
      • AT1G15400.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -885; Region: promoter
      • AT1G15410.1 - [+] show detail - aspartate-glutamate racemase family
        Distance: -537; Region: promoter
    Flanking Genome Sequence: ET12943 - 5-prime edge 
    TCCTACTTTC TCCCTGGGCC TGAGAGTAAT GAATATAGAC TTCTATTCGG 
    CGATTGGGCC CAATTCTTTA TCTCAATCTT CAACATTGGT GAGTTGTGCC 
    AACTCAGACG GGGTTATTAA TTTGTGTTAT GCACATTACT TTAATCCAAA 
    GAATACAGTT TTGCTAAACC CACCACATGC GTATGTTTTA GTTAGTGGTG 
    ATCCTGAGAA GAAACAGACG ATATAAGAAG GTGAATTATT GAACAAAAGT 
    TATACCATAT TATAGTACAA TGATGTTGAC TTTGAATACA AATTGGTAAC 
    CGAATTACTT TGACTCACTT TCACCACTTT GTATTGTTTT TCCTTTCAAG 
    TTTTTATAAA GAGAGATTTG GCATTTTAAT AACATCCTCA CCTAATAGAT 
    TTGGTTTACC GAAATGGGGA AGAAGGAAAT ATTAAATTAG TGTGTCCTAT 
    AAGTCAATTC TCCTGTTCAT

AT1G15400.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 82 Blast hits to 82 proteins in 16 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G15400.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 82 Blast hits to 82 proteins in 16 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G15400.3

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 84 Blast hits to 84 proteins in 17 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G15405.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Unknown gene
Link
InterPro Scan - TAIR

AT1G15410.1

Model type
Protein coding
Short Description
aspartate-glutamate racemase family
Computational Description
aspartate-glutamate racemase family; FUNCTIONS IN: racemase and epimerase activity, acting on amino acids and derivatives; INVOLVED IN: metabolic process, cellular amino acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Asp/Glu/hydantoin racemase (InterPro:IPR015942), Aspartate racemase (InterPro:IPR004380), Asp/Glu racemase (InterPro:IPR001920); Has 2436 Blast hits to 2424 proteins in 674 species: Archae - 57; Bacteria - 1708; Metazoa - 0; Fungi - 2; Plants - 35; Viruses - 0; Other Eukaryotes - 634 (source: NCBI BLink).
Link
InterPro Scan - TAIR